Package: ABarray 1.80.0

Yongming Andrew Sun

ABarray: Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Authors:Yongming Andrew Sun

ABarray_1.80.0.tar.gz
ABarray_1.80.0.zip(r-4.7-any)ABarray_1.80.0.zip(r-4.6-any)ABarray_1.80.0.zip(r-4.5-any)
ABarray_1.80.0.tgz(r-4.6-any)ABarray_1.80.0.tgz(r-4.5-any)
ABarray_1.80.0.tar.gz(r-4.7-any)ABarray_1.80.0.tar.gz(r-4.6-any)
ABarray_1.80.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ABarray/json (API)

# Install 'ABarray' in R:
install.packages('ABarray', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ABarray-1.81.0(bioc 3.24)ABarray-1.80.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechannelpreprocessing

4.20 score 5 scripts 726 downloads 4 mentions 28 exports 8 dependencies

Last updated from:36c139577c (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR123
linux-develNOTE173
source / vignettesOK289
linux-releaseNOTE220
macos-releaseNOTE134
macos-oldrelNOTE111
windows-develNOTE89
windows-releaseNOTE91
windows-oldrelNOTE85
wasm-releaseOK80

Exports:ABarrayABarrayGUIcalcsnconcordcvvcvvPlotdoANOVAdoLPEdoPlotEsetdoPlotFCTdoVennDiagramdrawVennDiagramgetMemberEsetgetPantherMaphclusterPloticpPlotimputeFlaglpe.fdr.BHmamaplotmatrixPlotmvaPair2panel.corpanel.scatterqnNormalizergcolorsfuncsavejpgscaleColorBarsnSummary

Dependencies:BiobaseBiocGenericsgenericslatticeMASSMatrixmulttestsurvival

ABarray gene expression
Rendered fromABarray.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

ABarray gene expression GUI interface
Rendered fromABarrayGUI.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01