Package: ADAM 1.28.0

Jose Luiz Rybarczyk Filho

ADAM: ADAM: Activity and Diversity Analysis Module

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

Authors:André Luiz Molan [aut], Giordano Bruno Sanches Seco [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

ADAM_1.28.0.tar.gz
ADAM_1.28.0.zip(r-4.7)ADAM_1.28.0.zip(r-4.6)ADAM_1.28.0.zip(r-4.5)
ADAM_1.28.0.tgz(r-4.6-x86_64)ADAM_1.28.0.tgz(r-4.6-arm64)ADAM_1.28.0.tgz(r-4.5-x86_64)ADAM_1.28.0.tgz(r-4.5-arm64)
ADAM_1.28.0.tar.gz(r-4.7-arm64)ADAM_1.28.0.tar.gz(r-4.7-x86_64)ADAM_1.28.0.tar.gz(r-4.6-arm64)ADAM_1.28.0.tar.gz(r-4.6-x86_64)
ADAM_1.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ADAM/json (API)
NEWS

# Install 'ADAM' in R:
install.packages('ADAM', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On BioConductor:ADAM-1.29.0(bioc 3.24)ADAM-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

genesetenrichmentpathwayskegggeneexpressionmicroarraycpp

4.89 score 1 packages 13 scripts 482 mentions 2 exports 80 dependencies

Last updated from:6e9594812a (on RELEASE_3_23). Checks:1 WARNING, 11 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING198
linux-devel-arm64NOTE260
linux-devel-x86_64NOTE298
source / vignettesOK346
linux-release-arm64NOTE266
linux-release-x86_64NOTE333
macos-release-arm64NOTE196
macos-release-x86_64NOTE393
macos-oldrel-arm64NOTE173
macos-oldrel-x86_64NOTE359
windows-develNOTE443
windows-releaseNOTE413
windows-oldrelNOTE409
wasm-releaseOK146

Exports:ADAnalysisGFAGAnalysis

Dependencies:abindAnnotationDbiaskpassbase64encBiobaseBiocGenericsBiostringsbitbit64blobbslibcachemclicpp11crayoncrosstalkcurlDBIDelayedArraydigestdplyrDTevaluatefastmapfontawesomefsgenericsGenomicRangesglueGO.dbhighrhtmltoolshtmlwidgetshttrIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslotelpbapplypillarpkgconfigpngpromisesR6rappdirsRcpprlangrmarkdownRSQLiteS4ArraysS4VectorssassSeqinfoSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexutf8vctrswithrxfunXVectoryaml

ADAM: Activity and Diversity Analysis Module

André L. Molan, Giordano B. S. Seco, Agnes A. S. Takeda, Jose L. Rybarczyk-Filho

Rendered fromADAM.Rmdusingknitr::rmarkdownon Jun 16 2026.

Last update: 2021-09-01
Started: 2018-10-05