Package: AHMassBank 1.12.0

Johannes Rainer

AHMassBank: MassBank Annotation Resources for AnnotationHub

Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.

Authors:Johannes Rainer [cre]

AHMassBank_1.12.0.tar.gz
AHMassBank_1.12.0.zip(r-4.7)AHMassBank_1.12.0.zip(r-4.6)AHMassBank_1.12.0.zip(r-4.5)
AHMassBank_1.12.0.tgz(r-4.6-any)AHMassBank_1.12.0.tgz(r-4.5-any)
AHMassBank_1.12.0.tar.gz(r-4.7-any)AHMassBank_1.12.0.tar.gz(r-4.6-any)
AHMassBank_1.12.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
AHMassBank/json (API)
NEWS

# Install 'AHMassBank' in R:
install.packages('AHMassBank', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jorainer/ahmassbank/issues

On BioConductor:AHMassBank-1.13.0(bioc 3.24)AHMassBank-1.12.0(bioc 3.23)

massspectrometryannotationhubsoftware

3.30 score 1 stars 3 scripts 298 downloads 0 exports 108 dependencies

Last updated from:fd72ca748a (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE230
linux-devel-x86_64OK378
source / vignettesOK395
linux-release-x86_64OK383
macos-release-arm64OK298
macos-oldrel-arm64OK236
windows-develOK297
windows-releaseOK335
windows-oldrelOK289
wasm-releaseOK174

Exports:

Dependencies:abindAnnotationDbiAnnotationForgeAnnotationHubAnnotationHubDataaskpassBHBiobaseBiocBaseUtilsBiocCheckBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiocViewsBiostringsbitbit64bitopsblobcachemcallrcigarilloclicodetoolscommonmarkcpp11crayoncurlDBIdbplyrDelayedArraydplyrevaluatefastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphhighrhttrhttr2IRangesjsonliteKEGGRESTknitrlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslOrganismDbipillarpkgconfigpngprocessxpspurrrR6rappdirsRBGLRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerRUnitrvestS4ArraysS4VectorsselectrSeqinfosnowSparseArraystringdiststringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrxfunXMLxml2XVectoryaml

MassBank Data for AnnotationHub

Rendered fromcreating-MassBank-CompDbs.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2023-03-29
Started: 2022-08-30