Package: APAlyzer
Type: Package
Title: A toolkit for APA analysis using RNA-seq data
Version: 1.26.0
Description: Perform 3'UTR APA, Intronic APA and gene expression
        analysis using RNA-seq data.
Authors@R: c(person("Ruijia", "Wang", role=c("cre", "aut"),
                email="rjwang.bioinfo@gmail.com",
                comment = c(ORCID = "0000-0002-4211-5207")),
				person("Bin", "Tian", role="aut"),
				person("Wei-Chun", "Chen", role="aut"))
biocViews: Sequencing, RNASeq, DifferentialExpression, GeneExpression,
        GeneRegulation, Annotation, DataImport, Software
Imports: GenomicRanges, GenomicFeatures, GenomicAlignments, DESeq2,
        ggrepel, SummarizedExperiment, Rsubread, stats, ggplot2,
        methods, rtracklayer, VariantAnnotation, dplyr, tidyr, repmis,
        Rsamtools, rlang, txdbmaker, S4Vectors
Suggests: knitr, rmarkdown, BiocStyle, org.Mm.eg.db, AnnotationDbi,
        TBX20BamSubset, testthat, pasillaBamSubset, HybridMTest
URL: https://github.com/RJWANGbioinfo/APAlyzer/
BugReports: https://github.com/RJWANGbioinfo/APAlyzer/issues
VignetteBuilder: knitr
License: LGPL-3 + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.5.0)
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:50:41 UTC
RemoteUrl: https://github.com/bioc/APAlyzer
RemoteRef: RELEASE_3_23
RemoteSha: 18ab0742ccdd5766fa52bc2aae2b5460380d5961
NeedsCompilation: no
Packaged: 2026-10-10 17:08:17 UTC; root
Author: Ruijia Wang [cre, aut] (ORCID: <https://orcid.org/0000-0002-4211-5207>),
  Bin Tian [aut],
  Wei-Chun Chen [aut]
Maintainer: Ruijia Wang <rjwang.bioinfo@gmail.com>