Package: ASAFE
Type: Package
Title: Ancestry Specific Allele Frequency Estimation
Version: 1.38.0
Date: 2016-04-24
Author: Qian Zhang <qszhang@uw.edu>
Maintainer: Qian Zhang <qszhang@uw.edu>
Description: Given admixed individuals' bi-allelic SNP genotypes and
        ancestry pairs (where each ancestry can take one of three
        values) for multiple SNPs, perform an EM algorithm to deal with
        the fact that SNP genotypes are unphased with respect to
        ancestry pairs, in order to estimate ancestry-specific allele
        frequencies for all SNPs.
License: Artistic-2.0
biocViews: SNP, GenomeWideAssociation, LinkageDisequilibrium,
        BiomedicalInformatics, Genetics, ExperimentalDesign
LazyData: TRUE
Suggests: knitr, testthat
VignetteBuilder: knitr
Collate: estep.R nudge.R mstep.R increment_n.R em.R algorithm_1snp.R
        algorithm_1snp_wrapper.R get_mean_sd_error_anc_bin.R
        get_mean_sd_error_anc.R change_ancestry.R
        draw_allele_given_anc.R get_errors_1_scenario.R
        get_errors_summary_stats_1_scenario.R get_results_error.R
        get_scenario_errors.R get_true_freqs_1snp.R sample_ancestry.R
NeedsCompilation: no
Depends: R (>= 3.2)
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:43:52 UTC
RemoteUrl: https://github.com/bioc/ASAFE
RemoteRef: RELEASE_3_23
RemoteSha: 0b5eac968ce8ced2c30e39e83e7115fb54e07f81
Packaged: 2026-07-09 07:15:35 UTC; root