Package 'AffymetrixDataTestFiles'

Title: Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing
Description: This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution and other official sources.
Authors: Henrik Bengtsson [aut, cre], James Bullard [aut], Kasper Daniel Hansen [aut]
Maintainer: Henrik Bengtsson <[email protected]>
License: LGPL-2.1
Version: 0.50.0
Built: 2026-10-10 10:59:40 UTC
Source: https://github.com/bioc/AffymetrixDataTestFiles

Help Index

Package AffymetrixDataTestFiles

Description

This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution and other official sources. This package contains only data files.

Requirements

None.

Installation

To install this package, see http://www.bioconductor.org/.

Location of data files

Data files are located in two different directory tree depending if they are annotation data files or sample data files. The roots of these two directory structures are: 

    system.file("annotationData", package="AffymetrixDataTestFiles")
    system.file("rawData", package="AffymetrixDataTestFiles")

Where applicable, ASCII, XDA, and Calvin files are separated in different subdirectories for easy access to either type.

Directory structure: 

  annotationData/
    chipTypes/
      HG-Focus/
        +-HG-Focus.PSI
        3.ASCII/
          +-HG-Focus.CDF
      HuGene-1_0-st-v1/
        +-HuGene-1_0-st-v1.r4,10_probesets.pgf
      Mapping10K_Xba131/
        1.XDA/
          +-Mapping10K_Xba131.CDF
        3.ASCII/
          +-Mapping10K_Xba131.CDF
      Test3/
        +-Test3.PSI
        1.XDA/
          +-Test3.CDF
        3.ASCII/
          +-Test3.CDF
  rawData/
    FusionSDK_HG-Focus/
      HG-Focus/
        +-HG-Focus-1-121502.EXP
        +-HG-Focus-2-121502.EXP
        1.XDA/
          +-HG-Focus-1-121502.CHP
          +-HG-Focus-2-121502.CHP
        2.Calvin/
          +-HG-Focus-1-121502.CEL
          +-HG-Focus-1-121502.CHP
          +-HG-Focus-2-121502.CEL
          +-HG-Focus-2-121502.CHP
        3.ASCII/
          +-HG-Focus-1-121502.CEL
          +-HG-Focus-2-121502.CEL
    FusionSDK_HG-U133A/
      HG-U133A/
        2.Calvin/
          +-ethan1-1.CEL
    FusionSDK_Test3/
      Test3/
        +-Test3-1-121502.EXP
        +-Test3-2-121502.EXP
        1.XDA/
          +-Test3-1-121502.CHP
          +-Test3-2-121502.CHP
        2.Calvin/
          +-Test3-1-121502.CEL
          +-Test3-1-121502.CHP
          +-Test3-2-121502.CEL
          +-Test3-2-121502.CHP
        3.ASCII/
          +-Test3-1-121502.CEL
          +-Test3-2-121502.CEL

License

LGPL version 2.1 according to [1].

Author(s)

Adopted from [1] by the authors of this package.

References

[1] Affymetrix Inc, Fusion Software Developers Kit (SDK), 2007. http://www.affymetrix.com/support/developer/fusion/