Package: AlphaBeta 1.26.0

Yadollah Shahryary Dizaji

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.

Authors:Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut]

AlphaBeta_1.26.0.tar.gz
AlphaBeta_1.26.0.zip(r-4.7)AlphaBeta_1.26.0.zip(r-4.6)AlphaBeta_1.26.0.zip(r-4.5)
AlphaBeta_1.26.0.tgz(r-4.6-any)AlphaBeta_1.26.0.tgz(r-4.5-any)
AlphaBeta_1.26.0.tar.gz(r-4.7-any)AlphaBeta_1.26.0.tar.gz(r-4.6-any)
AlphaBeta_1.26.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AlphaBeta/json (API)
NEWS

# Install 'AlphaBeta' in R:
install.packages('AlphaBeta', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:AlphaBeta-1.27.0(bioc 3.24)AlphaBeta-1.26.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

epigeneticsfunctionalgenomicsgeneticsmathematicalbiology

4.85 score 8 scripts 7 mentions 14 exports 81 dependencies

Last updated from:83947f4354 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE142
linux-devel-x86_64NOTE433
source / vignettesOK436
linux-release-x86_64NOTE437
macos-release-arm64NOTE287
macos-oldrel-arm64NOTE287
windows-develNOTE406
windows-releaseNOTE372
windows-oldrelNOTE411
wasm-releaseOK139

Exports:ABneutralABneutralSOMAABnullABplotABselectMMABselectMMSOMAABselectUUABselectUUSOMABOOTmodelbuildPedigreedMatrixFtestRSSplotPedigreerc.meth.lvl

Dependencies:askpassbase64encBHBiocParallelbslibcachemclicodetoolscpp11crosstalkcurldata.tabledigestdplyrevaluateexpmfarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMatrixmemoisemimenloptrnumDerivopenssloptimxotelpillarpkgconfigplotlypracmapromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessnowstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

AlphaBeta

Y.Shahryary, Rashmi Hazarika, Frank Johannes

Rendered fromAlphaBeta.Rmdusingknitr::rmarkdownon Jun 19 2026.

Last update: 2020-04-26
Started: 2019-07-17