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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "AlphaMissenseR" in publications use:'
type: software
license: Artistic-2.0
title: 'AlphaMissenseR: Accessing AlphaMissense Data Resources in R'
version: 1.8.0
doi: 10.1093/bioadv/vbaf093
identifiers:
- type: doi
  value: 10.32614/CRAN.package.AlphaMissenseR
abstract: The AlphaMissense publication <https://www.science.org/doi/epdf/10.1126/science.adg7492>
  outlines how a variant of AlphaFold / DeepMind was used to predict missense variant
  pathogenicity. Supporting data on Zenodo <https://zenodo.org/record/10813168> include,
  for instance, 71M variants across hg19 and hg38 genome builds. The 'AlphaMissenseR'
  package allows ready access to the data, downloading individual files to DuckDB
  databases for exploration and integration into *R* and *Bioconductor* workflows.
authors:
- family-names: Morgan
  given-names: Martin
  email: mtmorgan.xyz@gmail.com
  orcid: https://orcid.org/0000-0002-5874-8148
- family-names: Nguyen
  given-names: Tram
  orcid: https://orcid.org/0000-0003-4809-6227
preferred-citation:
  type: article
  title: 'AlphaMissenseR: an integrated framework for investigating missense mutations
    in human protein-coding genes'
  authors:
  - family-names: Nguyen
    given-names: Tram N.
  - family-names: Lee
    given-names: Tyrone
  - family-names: Turaga
    given-names: Nitesh
  - family-names: Gentleman
    given-names: Robert
  - family-names: Geistlinger
    given-names: Ludwig
  - family-names: Morgan
    given-names: Martin
    email: mtmorgan.xyz@gmail.com
    orcid: https://orcid.org/0000-0002-5874-8148
  year: '2025'
  journal: Bioinformatic Advances
  doi: 10.1093/bioadv/vbaf093
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/mtmorgan/AlphaMissenseR
commit: ffb9cce970492084612bfbd14b0055c42eee7b7f
url: https://mtmorgan.github.io/AlphaMissenseR/
date-released: '2026-04-28'
contact:
- family-names: Morgan
  given-names: Martin
  email: mtmorgan.xyz@gmail.com
  orcid: https://orcid.org/0000-0002-5874-8148