Package: AssessORFData 1.30.0

Nicholas Cooley

AssessORFData: Data and Files for the AssessORF Package

This package provides access to mapping and results objects generated by the AssessORF package, as well as the genome sequences for the strains corresponding to those objects.

Authors:Deepank Korandla [aut], Nicholas Cooley [cre]

AssessORFData_1.30.0.tar.gz
AssessORFData_1.30.0.tar.gz(r-4.7-any)AssessORFData_1.30.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
AssessORFData/json (API)

# Install 'AssessORFData' in R:

install.packages('AssessORFData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

AP1_PreSaved_DataMapObj - 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
AP1_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
AP1_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
AP1_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
AP1_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
AssessORF_StrainIDs - Vector of strain IDs used in the package
ATCC11842_PreSaved_DataMapObj - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
ATCC11842_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
ATCC11842_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
ATCC11842_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
ATCC11842_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
ATCC13032_PreSaved_DataMapObj - 'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
ATCC13032_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
ATCC13032_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
ATCC13032_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
ATCC13032_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
ATCC17978_PreSaved_DataMapObj - 'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
ATCC17978_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
ATCC17978_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
ATCC17978_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
ATCC17978_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
ATCC700084_PreSaved_DataMapObj - 'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
ATCC700084_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
ATCC700084_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
ATCC700084_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
ATCC700084_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
BW25113_PreSaved_DataMapObj - 'Assessment' Objects for _Escherichia coli_ strain BW25113
BW25113_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Escherichia coli_ strain BW25113
BW25113_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Escherichia coli_ strain BW25113
BW25113_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Escherichia coli_ strain BW25113
BW25113_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Escherichia coli_ strain BW25113
CCMP1375_PreSaved_DataMapObj - 'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
CCMP1375_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
CCMP1375_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
CCMP1375_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
CCMP1375_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
CECT5344_PreSaved_DataMapObj - 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
CECT5344_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
CECT5344_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
CECT5344_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
CECT5344_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
CNRZ327_PreSaved_DataMapObj - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
CNRZ327_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
CNRZ327_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
CNRZ327_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
CNRZ327_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
COH1_PreSaved_DataMapObj - 'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
COH1_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
COH1_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
COH1_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
COH1_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
D_UW_3_CX_PreSaved_DataMapObj - 'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
D_UW_3_CX_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
D_UW_3_CX_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
D_UW_3_CX_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
D_UW_3_CX_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
EGD_e_PreSaved_DataMapObj - 'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
EGD_e_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
EGD_e_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
EGD_e_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
EGD_e_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
H37Rv_PreSaved_DataMapObj - 'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
H37Rv_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
H37Rv_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
H37Rv_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
H37Rv_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
HG001_PreSaved_DataMapObj - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
HG001_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
HG001_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
HG001_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
HG001_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
Houston_1_PreSaved_DataMapObj - 'Assessment' Objects for _Bartonella henselae_ strain Houston-1
Houston_1_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Bartonella henselae_ strain Houston-1
Houston_1_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Bartonella henselae_ strain Houston-1
Houston_1_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Bartonella henselae_ strain Houston-1
Houston_1_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Bartonella henselae_ strain Houston-1
Il1403_PreSaved_DataMapObj - 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
Il1403_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
Il1403_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
Il1403_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
Il1403_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
K_12_MG1655_PreSaved_DataMapObj - 'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
K_12_MG1655_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
K_12_MG1655_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
K_12_MG1655_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
K_12_MG1655_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
LAL14_1_PreSaved_DataMapObj - 'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
LAL14_1_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
LAL14_1_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
LAL14_1_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
LAL14_1_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
MG1363_PreSaved_DataMapObj - 'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
MG1363_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
MG1363_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
MG1363_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
MG1363_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
MGAS5005_PreSaved_DataMapObj - 'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
MGAS5005_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
MGAS5005_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
MGAS5005_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
MGAS5005_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
NCIB_3610_PreSaved_DataMapObj - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
NCIB_3610_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
NCIB_3610_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
NCIB_3610_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
NCIB_3610_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
PAO1_PreSaved_DataMapObj - 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
PAO1_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
PAO1_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
PAO1_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
PAO1_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
SL1344_PreSaved_DataMapObj - 'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
SL1344_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
SL1344_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
SL1344_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
SL1344_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
Strain10403S_PreSaved_DataMapObj - 'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
Strain10403S_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
Strain10403S_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
Strain10403S_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
Strain10403S_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
Strain168_PreSaved_DataMapObj - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
Strain168_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
Strain168_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
Strain168_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
Strain168_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
TCH1516_PreSaved_DataMapObj - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
TCH1516_PreSaved_ResultsObj_GenBank - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
TCH1516_PreSaved_ResultsObj_GeneMarkS2 - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
TCH1516_PreSaved_ResultsObj_Glimmer - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
TCH1516_PreSaved_ResultsObj_Prodigal - 'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516

On BioConductor:AssessORFData-1.31.0(data/experiment 3.24)AssessORFData-1.30.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

organismdata bacillus_subtilis_data escherichia_coli_data pseudomonas_aeruginosa_data staphylococcus_aureus_data genome proteome sequencingdata datapkg

4.00 score 2 scripts 5 exports 24 dependencies

Last updated from:ae71bf4386 (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	142
linux-devel	NOTE	381
source / vignettes	OK	1164
linux-release	NOTE	290

Exports:GetDataMapObj GetGeneSources GetResultsObj GetStrainIDs SaveGenomeToPath

Dependencies:BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon DBI DECIPHER fastmap generics glue IRanges lifecycle memoise pkgconfig rlang RSQLite S4Vectors Seqinfo vctrs XVector

Quick Guide to AssessORFData

Introduction | Strains and Gene Sources | Getting the Objects | Saving the Genome | Session Info

Rendered fromAssessORFDataGuide.Rmdusingknitr::rmarkdown

Last update: 2018-12-25
Started: 2018-10-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
'Assessment' Objects for _Streptococcus pyogenes_ strain AP1	AP1 AP1_PreSaved_DataMapObj AP1_PreSaved_ResultsObj_GenBank AP1_PreSaved_ResultsObj_GeneMarkS2 AP1_PreSaved_ResultsObj_Glimmer AP1_PreSaved_ResultsObj_Prodigal
Vector of strain IDs used in the package	AssessORF_StrainIDs
'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842	ATCC11842 ATCC11842_PreSaved_DataMapObj ATCC11842_PreSaved_ResultsObj_GenBank ATCC11842_PreSaved_ResultsObj_GeneMarkS2 ATCC11842_PreSaved_ResultsObj_Glimmer ATCC11842_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032	ATCC13032 ATCC13032_PreSaved_DataMapObj ATCC13032_PreSaved_ResultsObj_GenBank ATCC13032_PreSaved_ResultsObj_GeneMarkS2 ATCC13032_PreSaved_ResultsObj_Glimmer ATCC13032_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978	ATCC17978 ATCC17978_PreSaved_DataMapObj ATCC17978_PreSaved_ResultsObj_GenBank ATCC17978_PreSaved_ResultsObj_GeneMarkS2 ATCC17978_PreSaved_ResultsObj_Glimmer ATCC17978_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084	ATCC700084 ATCC700084_PreSaved_DataMapObj ATCC700084_PreSaved_ResultsObj_GenBank ATCC700084_PreSaved_ResultsObj_GeneMarkS2 ATCC700084_PreSaved_ResultsObj_Glimmer ATCC700084_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Escherichia coli_ strain BW25113	BW25113 BW25113_PreSaved_DataMapObj BW25113_PreSaved_ResultsObj_GenBank BW25113_PreSaved_ResultsObj_GeneMarkS2 BW25113_PreSaved_ResultsObj_Glimmer BW25113_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375	CCMP1375 CCMP1375_PreSaved_DataMapObj CCMP1375_PreSaved_ResultsObj_GenBank CCMP1375_PreSaved_ResultsObj_GeneMarkS2 CCMP1375_PreSaved_ResultsObj_Glimmer CCMP1375_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344	CECT5344 CECT5344_PreSaved_DataMapObj CECT5344_PreSaved_ResultsObj_GenBank CECT5344_PreSaved_ResultsObj_GeneMarkS2 CECT5344_PreSaved_ResultsObj_Glimmer CECT5344_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11	CNRZ327 CNRZ327_PreSaved_DataMapObj CNRZ327_PreSaved_ResultsObj_GenBank CNRZ327_PreSaved_ResultsObj_GeneMarkS2 CNRZ327_PreSaved_ResultsObj_Glimmer CNRZ327_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Streptococcus agalactiae_ strain COH1	COH1 COH1_PreSaved_DataMapObj COH1_PreSaved_ResultsObj_GenBank COH1_PreSaved_ResultsObj_GeneMarkS2 COH1_PreSaved_ResultsObj_Glimmer COH1_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX	D_UW_3_CX D_UW_3_CX_PreSaved_DataMapObj D_UW_3_CX_PreSaved_ResultsObj_GenBank D_UW_3_CX_PreSaved_ResultsObj_GeneMarkS2 D_UW_3_CX_PreSaved_ResultsObj_Glimmer D_UW_3_CX_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e	EGD_e EGD_e_PreSaved_DataMapObj EGD_e_PreSaved_ResultsObj_GenBank EGD_e_PreSaved_ResultsObj_GeneMarkS2 EGD_e_PreSaved_ResultsObj_Glimmer EGD_e_PreSaved_ResultsObj_Prodigal
Get a Data Map Object	GetDataMapObj
Get the Gene Sources	GetGeneSources
Get a Results Object	GetResultsObj
Get the Strain Identifiers	GetStrainIDs
'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv	H37Rv H37Rv_PreSaved_DataMapObj H37Rv_PreSaved_ResultsObj_GenBank H37Rv_PreSaved_ResultsObj_GeneMarkS2 H37Rv_PreSaved_ResultsObj_Glimmer H37Rv_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001	HG001 HG001_PreSaved_DataMapObj HG001_PreSaved_ResultsObj_GenBank HG001_PreSaved_ResultsObj_GeneMarkS2 HG001_PreSaved_ResultsObj_Glimmer HG001_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Bartonella henselae_ strain Houston-1	Houston_1 Houston_1_PreSaved_DataMapObj Houston_1_PreSaved_ResultsObj_GenBank Houston_1_PreSaved_ResultsObj_GeneMarkS2 Houston_1_PreSaved_ResultsObj_Glimmer Houston_1_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403	Il1403 Il1403_PreSaved_DataMapObj Il1403_PreSaved_ResultsObj_GenBank Il1403_PreSaved_ResultsObj_GeneMarkS2 Il1403_PreSaved_ResultsObj_Glimmer Il1403_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655	K_12_MG1655 K_12_MG1655_PreSaved_DataMapObj K_12_MG1655_PreSaved_ResultsObj_GenBank K_12_MG1655_PreSaved_ResultsObj_GeneMarkS2 K_12_MG1655_PreSaved_ResultsObj_Glimmer K_12_MG1655_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1	LAL14_1 LAL14_1_PreSaved_DataMapObj LAL14_1_PreSaved_ResultsObj_GenBank LAL14_1_PreSaved_ResultsObj_GeneMarkS2 LAL14_1_PreSaved_ResultsObj_Glimmer LAL14_1_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363	MG1363 MG1363_PreSaved_DataMapObj MG1363_PreSaved_ResultsObj_GenBank MG1363_PreSaved_ResultsObj_GeneMarkS2 MG1363_PreSaved_ResultsObj_Glimmer MG1363_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005	MGAS5005 MGAS5005_PreSaved_DataMapObj MGAS5005_PreSaved_ResultsObj_GenBank MGAS5005_PreSaved_ResultsObj_GeneMarkS2 MGAS5005_PreSaved_ResultsObj_Glimmer MGAS5005_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610	NCIB_3610 NCIB_3610_PreSaved_DataMapObj NCIB_3610_PreSaved_ResultsObj_GenBank NCIB_3610_PreSaved_ResultsObj_GeneMarkS2 NCIB_3610_PreSaved_ResultsObj_Glimmer NCIB_3610_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1	PAO1 PAO1_PreSaved_DataMapObj PAO1_PreSaved_ResultsObj_GenBank PAO1_PreSaved_ResultsObj_GeneMarkS2 PAO1_PreSaved_ResultsObj_Glimmer PAO1_PreSaved_ResultsObj_Prodigal
Save a Strain's Genome to a Directory	SaveGenomeToPath
'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344	SL1344 SL1344_PreSaved_DataMapObj SL1344_PreSaved_ResultsObj_GenBank SL1344_PreSaved_ResultsObj_GeneMarkS2 SL1344_PreSaved_ResultsObj_Glimmer SL1344_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Listeria monocytogenes_ strain 10403S	Strain10403S Strain10403S_PreSaved_DataMapObj Strain10403S_PreSaved_ResultsObj_GenBank Strain10403S_PreSaved_ResultsObj_GeneMarkS2 Strain10403S_PreSaved_ResultsObj_Glimmer Strain10403S_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168	Strain168 Strain168_PreSaved_DataMapObj Strain168_PreSaved_ResultsObj_GenBank Strain168_PreSaved_ResultsObj_GeneMarkS2 Strain168_PreSaved_ResultsObj_Glimmer Strain168_PreSaved_ResultsObj_Prodigal
'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516	TCH1516 TCH1516_PreSaved_DataMapObj TCH1516_PreSaved_ResultsObj_GenBank TCH1516_PreSaved_ResultsObj_GeneMarkS2 TCH1516_PreSaved_ResultsObj_Glimmer TCH1516_PreSaved_ResultsObj_Prodigal