Package: BASiCStan 1.14.0

Alan OCallaghan

BASiCStan: Stan implementation of BASiCS

Provides an interface to infer the parameters of BASiCS using the variational inference (ADVI), Markov chain Monte Carlo (NUTS), and maximum a posteriori (BFGS) inference engines in the Stan programming language. BASiCS is a Bayesian hierarchical model that uses an adaptive Metropolis within Gibbs sampling scheme. Alternative inference methods provided by Stan may be preferable in some situations, for example for particularly large data or posterior distributions with difficult geometries.

Authors:Alan O'Callaghan [aut, cre], Catalina Vallejos [aut]

BASiCStan_1.14.0.tar.gz
BASiCStan_1.14.0.zip(r-4.7)BASiCStan_1.14.0.zip(r-4.6)BASiCStan_1.14.0.zip(r-4.5)
BASiCStan_1.14.0.tgz(r-4.6-x86_64)BASiCStan_1.14.0.tgz(r-4.6-arm64)BASiCStan_1.14.0.tgz(r-4.5-x86_64)BASiCStan_1.14.0.tgz(r-4.5-arm64)
BASiCStan_1.14.0.tar.gz(r-4.7-arm64)BASiCStan_1.14.0.tar.gz(r-4.7-x86_64)BASiCStan_1.14.0.tar.gz(r-4.6-arm64)BASiCStan_1.14.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
BASiCStan/json (API)
NEWS

# Install 'BASiCStan' in R:

install.packages('BASiCStan', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alanocallaghan/basicstan/issues

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:BASiCStan-1.15.0(bioc 3.24)BASiCStan-1.14.0(bioc 3.23)

immunooncology normalization sequencing rnaseq software geneexpression transcriptomics singlecell differentialexpression bayesian cellbiology single-cell-rna-seq cpp

3.78 score 2 scripts 2 exports 145 dependencies

Last updated from:e515f0d417 (on RELEASE_3_23). Checks:1 NOTE, 11 WARNING, 1 OK, 1 FAIL. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	344
linux-devel-arm64	WARNING	487
linux-devel-x86_64	WARNING	574
source / vignettes	OK	497
linux-release-arm64	WARNING	506
linux-release-x86_64	WARNING	589
macos-release-arm64	WARNING	381
macos-release-x86_64	WARNING	729
macos-oldrel-arm64	WARNING	424
macos-oldrel-x86_64	WARNING	883
windows-devel	WARNING	690
windows-release	WARNING	585
windows-oldrel	WARNING	589
wasm-release	FAIL	202