Package: BBCAnalyzer 1.42.0

Sarah Sandmann

BBCAnalyzer: BBCAnalyzer: an R/Bioconductor package for visualizing base counts

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

Authors:Sarah Sandmann

BBCAnalyzer_1.42.0.tar.gz
BBCAnalyzer_1.42.0.zip(r-4.7)BBCAnalyzer_1.42.0.zip(r-4.6)BBCAnalyzer_1.42.0.zip(r-4.5)
BBCAnalyzer_1.42.0.tgz(r-4.6-any)BBCAnalyzer_1.42.0.tgz(r-4.5-any)
BBCAnalyzer_1.42.0.tar.gz(r-4.7-any)BBCAnalyzer_1.42.0.tar.gz(r-4.6-any)
BBCAnalyzer_1.42.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BBCAnalyzer/json (API)
NEWS

# Install 'BBCAnalyzer' in R:
install.packages('BBCAnalyzer', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:BBCAnalyzer-1.43.0(bioc 3.24)BBCAnalyzer-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingalignmentcoveragegeneticvariabilitysnp

3.30 score 1 scripts 512 downloads 1 mentions 2 exports 68 dependencies

Last updated from:c72ccc173c (on RELEASE_3_23). Checks:1 ERROR, 4 NOTE, 2 OK, 3 WARNING. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR258
linux-devel-x86_64NOTE435
source / vignettesOK552
linux-release-x86_64NOTE454
macos-release-arm64NOTE230
macos-oldrel-arm64NOTE300
windows-develWARNING437
windows-releaseWARNING350
windows-oldrelWARNING402
wasm-releaseOK190

Exports:analyzeBasesanalyzeBasesPlotOnly

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysVariantAnnotationvctrsXMLXVectoryaml

Using BBCAnalyzer

Rendered fromBBCAnalyzer.Rnwusingutils::Sweaveon May 31 2026.

Last update: 2018-08-28
Started: 2015-08-13

Readme and manuals

Help Manual

Help pageTopics
BBCAnalyzer: an R/Bioconductor package for visualizing base countsBases By Cigar Analyzer Bases Coverage BasesByCigar Analyzer BasesByCigarAnalyzer BBCAnalyzer Cigar Analysis
Analyze the bases at all previously defined positionsanalyze Bases analyzeBases
Plots the number of reads at all previously defined positionsanalyze Bases Plot Only analyzeBasesPlotOnly