Package: BCRANK 1.74.0
Adam Ameur
BCRANK: Predicting binding site consensus from ranked DNA sequences
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Authors:
BCRANK_1.74.0.tar.gz
BCRANK_1.74.0.zip(r-4.7)BCRANK_1.74.0.zip(r-4.6)BCRANK_1.74.0.zip(r-4.5)
BCRANK_1.74.0.tgz(r-4.6-x86_64)BCRANK_1.74.0.tgz(r-4.6-arm64)BCRANK_1.74.0.tgz(r-4.5-x86_64)BCRANK_1.74.0.tgz(r-4.5-arm64)
BCRANK_1.74.0.tar.gz(r-4.7-arm64)BCRANK_1.74.0.tar.gz(r-4.7-x86_64)BCRANK_1.74.0.tar.gz(r-4.6-arm64)BCRANK_1.74.0.tar.gz(r-4.6-x86_64)
BCRANK_1.74.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BCRANK/json (API)
| # Install 'BCRANK' in R: |
| install.packages('BCRANK', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- BCRANKout - BCRANK results for USF1 ChIP-chip data
On BioConductor:BCRANK-1.75.0(bioc 3.24)BCRANK-1.74.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:ef18c99f83 (on RELEASE_3_23). Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 119 | ||
| linux-devel-arm64 | NOTE | 163 | ||
| linux-devel-x86_64 | NOTE | 182 | ||
| source / vignettes | OK | 172 | ||
| linux-release-arm64 | NOTE | 147 | ||
| linux-release-x86_64 | NOTE | 152 | ||
| macos-release-arm64 | NOTE | 107 | ||
| macos-release-x86_64 | NOTE | 246 | ||
| macos-oldrel-arm64 | NOTE | 109 | ||
| macos-oldrel-x86_64 | NOTE | 250 | ||
| windows-devel | NOTE | 125 | ||
| windows-release | NOTE | 127 | ||
| windows-oldrel | NOTE | 112 | ||
| wasm-release | OK | 109 |
Exports:bcrankbcrankScoreconsensusfnamematchingSitesmatchVectorplotpwmsearchPathshowtoptable
Dependencies:BiocGenericsBiostringscrayongenericsIRangesS4VectorsSeqinfoXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BCRANK: predicting binding site consensus from ranked DNA sequences | bcrank |
| Class "BCRANKmatch" | BCRANKmatch BCRANKmatch-class bcrankScore consensus matchVector |
| BCRANK results for USF1 ChIP-chip data | BCRANKout |
| Class "BCRANKresult" | BCRANKresult BCRANKresult-class fname toptable |
| Class "BCRANKsearch" | BCRANKsearch BCRANKsearch-class plot,BCRANKsearch,missing-method pwm searchPath |
| Report IUPAC consensus occurrences in a fasta file | matchingSites |