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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BERT" in publications use:'
type: software
license: GPL-3.0-only
title: 'BERT: High Performance Data Integration for Large-Scale Analyses of Incomplete
  Omic Profiles Using Batch-Effect Reduction Trees (BERT)'
version: 1.8.0
doi: 10.1002/pmic.202400100
identifiers:
- type: doi
  value: 10.32614/CRAN.package.BERT
abstract: Provides efficient batch-effect adjustment of data with missing values.
  BERT orders all batch effect correction to a tree of pairwise computations. BERT
  allows parallelization over sub-trees.
authors:
- family-names: Schumann
  given-names: Yannis
  email: yannis.schumann@desy.de
  orcid: https://orcid.org/0000-0002-2379-200X
- family-names: Schlumbohm
  given-names: Simon
  email: schlumbohm@hsu-hh.de
  orcid: https://orcid.org/0000-0002-0083-5142
preferred-citation:
  type: article
  title: Computational Methods for Data Integration and Imputation of Missing Values
    in Omics Datasets
  authors:
  - family-names: Schumann
    given-names: Yannis
    email: yannis.schumann@desy.de
    orcid: https://orcid.org/0000-0002-2379-200X
  - family-names: Gocke
    given-names: Antonia
  - family-names: Neumann
    given-names: Julia E.
  doi: 10.1002/pmic.202400100
  url: https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/pmic.202400100
  journal: PROTEOMICS
  year: '2024'
  issn: 1615-9861
  month: '12'
  publisher:
    name: Wiley
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/HSU-HPC/BERT
commit: 0c9135c07ef6d222576dbcd4cbf9513018e2a705
url: https://github.com/HSU-HPC/BERT/
date-released: '2026-04-28'
contact:
- family-names: Schumann
  given-names: Yannis
  email: yannis.schumann@desy.de
  orcid: https://orcid.org/0000-0002-2379-200X