Package: BEclear
Type: Package
Title: Correction of batch effects in DNA methylation data
Version: 2.28.0
Date: 2025-01-02
Authors@R: c(person("Livia", "Rasp", email = "livia.rasp@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-0164-2163")),
             person("Markus", "Merl", role = "aut"),
             person("Ruslan", "Akulenko", role = "aut"))
Description: Provides functions to detect and correct for batch effects
        in DNA methylation data. The core function is based on latent
        factor models and can also be used to predict missing values in
        any other matrix containing real numbers.
License: GPL-3
SystemRequirements: C++11
Depends: BiocParallel (>= 1.14.2)
Imports: logger, Rdpack, Matrix, data.table (>= 1.11.8), Rcpp, abind,
        stats, graphics, utils, methods, dixonTest, ids
Suggests: testthat, BiocStyle, knitr, rmarkdown, pander, seewave
VignetteBuilder: knitr
biocViews: BatchEffect, DNAMethylation, Software, Preprocessing,
        StatisticalMethod
RoxygenNote: 7.3.3
RdMacros: Rdpack
Encoding: UTF-8
URL: https://github.com/uds-helms/BEclear
BugReports: https://github.com/uds-helms/BEclear/issues
LinkingTo: Rcpp
Config/pak/sysreqs: libssl-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:41:18 UTC
RemoteUrl: https://github.com/bioc/BEclear
RemoteRef: RELEASE_3_23
RemoteSha: 953b198caaba5d7bc80ede426a524dca553b9cfe
NeedsCompilation: yes
Packaged: 2026-07-04 08:21:08 UTC; root
Author: Livia Rasp [aut, cre] (ORCID: <https://orcid.org/0000-0003-0164-2163>),
  Markus Merl [aut],
  Ruslan Akulenko [aut]
Maintainer: Livia Rasp <livia.rasp@gmail.com>