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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BP4RNAseq" in publications use:'
type: software
license: GPL-2.0-only
title: 'BP4RNAseq: A babysitter''s package for reproducible RNA-seq analysis'
version: 1.22.0
abstract: An automated pipe for reproducible RNA-seq analysis with the minimal efforts
  from researchers. The package can process bulk RNA-seq data and single-cell RNA-seq
  data. You can only provide the taxa name and the accession id of RNA-seq data deposited
  in the National Center for Biotechnology Information (NCBI). After a cup of tea
  or longer, you will get formated gene expression data as gene count and transcript
  count based on both alignment-based and alignment-free workflows.
authors:
- family-names: Sun
  given-names: Shanwen
  email: sunshanwen@gmail.com
- family-names: Xu
  given-names: Lei
- family-names: Zou
  given-names: Quan
preferred-citation:
  type: manual
  title: 'BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq
    data analyses using both alignment-based and alignment-free quantification methods'
  authors:
  - family-names: Sun
    given-names: Shanwen
    email: sunshanwen@gmail.com
  - family-names: Xu
    given-names: Lei
  - family-names: Zou
    given-names: Quan
  year: '2020'
  notes: R package version 0.2.2
  url: https://github.com/sunshanwen/BP4RNAseq
repository: https://bioconductor.org/
commit: 3f2d20154bd820a806b68ea17007606b060d5323
date-released: '2026-04-28'
contact:
- family-names: Sun
  given-names: Shanwen
  email: sunshanwen@gmail.com