Package: BadRegionFinder
Type: Package
Title: BadRegionFinder: an R/Bioconductor package for identifying
        regions with bad coverage
Version: 1.40.0
Date: 2016-03-07
Author: Sarah Sandmann
Maintainer: Sarah Sandmann <sarah.sandmann@uni-muenster.de>
Description: BadRegionFinder is a package for identifying regions with
        a bad, acceptable and good coverage in sequence alignment data
        available as bam files. The whole genome may be considered as
        well as a set of target regions. Various visual and textual
        types of output are available.
License: LGPL-3
Imports: VariantAnnotation, Rsamtools, biomaRt, GenomicRanges,
        S4Vectors, utils, stats, grDevices, graphics
Suggests: BSgenome.Hsapiens.UCSC.hg19
biocViews: Coverage, Sequencing, Alignment, WholeGenome, Classification
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:43:12 UTC
RemoteUrl: https://github.com/bioc/BadRegionFinder
RemoteRef: RELEASE_3_23
RemoteSha: 9c97404d876cd513e887948a80868f4e1088a812
Packaged: 2026-09-22 07:47:29 UTC; root