Package: Basic4Cseq
Type: Package
Title: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Version: 1.48.0
Date: 2025-06-27
Author: Carolin Walter
Maintainer: Carolin Walter <carolin.walter@uni-muenster.de>
Imports: methods, RCircos, BSgenome.Ecoli.NCBI.20080805
Depends: R (>= 3.5.0), Biostrings, GenomicAlignments, caTools,
        GenomicRanges, grDevices, graphics, stats, utils
Suggests: BSgenome.Hsapiens.UCSC.hg19
Description: Basic4Cseq is an R/Bioconductor package for basic
        filtering, analysis and subsequent visualization of 4C-seq
        data. Virtual fragment libraries can be created for any
        BSGenome package, and filter functions for both reads and
        fragments and basic quality controls are included. Fragment
        data in the vicinity of the experiment's viewpoint can be
        visualized as a coverage plot based on a running median
        approach and a multi-scale contact profile.
License: LGPL-3
biocViews: ImmunoOncology, Visualization, QualityControl, Sequencing,
        Coverage, Alignment, RNASeq, SequenceMatching, DataImport
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:38:43 UTC
RemoteUrl: https://github.com/bioc/Basic4Cseq
RemoteRef: RELEASE_3_23
RemoteSha: 3c243e7af13d3775d57bb86fb9025f357cdc1e6f
NeedsCompilation: no
Packaged: 2026-11-01 17:56:39 UTC; root