# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BatchSVG" in publications use:'
type: software
license: Artistic-2.0
title: 'BatchSVG: Identify Batch-Biased Spatially Variable Genes'
version: 1.4.0
doi: 10.64898/2025.12.09.693192
identifiers:
- type: doi
  value: 10.32614/CRAN.package.BatchSVG
abstract: BatchSVG is a method to identify batch-biased spatially variable genes (SVGs)
  in spatial transcriptomics data. The batch variable can be defined as sample, donor
  sex, or other batch effects of interest. The BatchSVG method is based on the binomial
  deviance model (Townes et al, 2019).
authors:
- family-names: Hou
  given-names: Christine
  email: chris2018hou@gmail.com
  orcid: https://orcid.org/0009-0001-5350-0629
- family-names: Shah
  given-names: Kinnary
  email: kinnaryshahh@gmail.com
- family-names: Thompson
  given-names: Jacqueline R.
  email: jthom338@jh.edu
- family-names: Hicks
  given-names: Stephanie C.
  email: shicks19@jhu.edu
  orcid: https://orcid.org/0000-0002-7858-0231
preferred-citation:
  type: article
  title: 'BatchSVG: identifying batch-biased genes in the application of spatially
    variable gene detection'
  authors:
  - family-names: Shah
    given-names: Kinnary
    email: kinnaryshahh@gmail.com
  - family-names: Hou
    given-names: Christine
    email: chris2018hou@gmail.com
    orcid: https://orcid.org/0009-0001-5350-0629
  - family-names: Thompson
    given-names: Jacqueline R.
    email: jthom338@jh.edu
  - family-names: Hicks
    given-names: Stephanie C.
    email: shicks19@jhu.edu
    orcid: https://orcid.org/0000-0002-7858-0231
  journal: bioRxiv
  year: '2026'
  doi: 10.64898/2025.12.09.693192
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/christinehou11/BatchSVG
commit: 402c3bd7e37792e0763d951076f063789d3ee88b
url: https://christinehou11.github.io/BatchSVG
date-released: '2026-04-28'
contact:
- family-names: Shah
  given-names: Kinnary
  email: kinnaryshahh@gmail.com