Package: BeadSorted.Saliva.EPIC 1.20.0

Jonah Fisher

BeadSorted.Saliva.EPIC: Illumina EPIC data on BeadSorted child saliva cells

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

Authors:Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

BeadSorted.Saliva.EPIC_1.20.0.tar.gz
BeadSorted.Saliva.EPIC_1.20.0.tar.gz(r-4.7-any)BeadSorted.Saliva.EPIC_1.20.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BeadSorted.Saliva.EPIC/json (API)

# Install 'BeadSorted.Saliva.EPIC' in R:

install.packages('BeadSorted.Saliva.EPIC', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

BeadSorted.Saliva.EPIC.estimates - Estimated cell proportion for samples

On BioConductor:BeadSorted.Saliva.EPIC-1.21.0(data/experiment 3.24)BeadSorted.Saliva.EPIC-1.20.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata homo_sapiens_data microarraydata genome methylationarraydata experimenthub datapkg

4.00 score 1 scripts 0 exports 142 dependencies

Last updated from:8533156d12 (on RELEASE_3_23). Checks:1 WARNING, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	199
linux-devel	OK	460
source / vignettes	OK	300
linux-release	OK	409

Exports:

Dependencies:abind annotate AnnotationDbi AnnotationHub askpass base64 beanplot BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO biocmake BiocManager BiocParallel BiocVersion Biostrings bit bit64 bitops blob bumphunter cachem cigarillo cli clipr codetools cpp11 crayon curl data.table DBI dbplyr DelayedArray DelayedMatrixStats digest dir.expiry doRNG dplyr ExperimentHub fastmap filelock foreach formatR futile.logger futile.options genefilter generics GenomicAlignments GenomicFeatures GenomicRanges GEOquery glue h5mread HDF5Array hms httr httr2 illuminaio IRanges iterators jsonlite KEGGREST lambda.r lattice lifecycle limma locfit magrittr MASS Matrix MatrixGenerics matrixStats mclust memoise mime minfi multtest nlme nor1mix openssl pillar pkgconfig plyr png preprocessCore prettyunits progress purrr quadprog R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RCurl readr rentrez reshape restfulr rhdf5 rhdf5filters Rhdf5lib Rhtslib rjson rlang rngtools Rsamtools RSQLite rtracklayer rvest S4Arrays S4Vectors scrime selectr Seqinfo siggenes snow SparseArray sparseMatrixStats statmod stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect tzdb utf8 vctrs vroom withr XML xml2 xtable XVector yaml

BeadSorted.Saliva.EPIC

Overview | RGChannelSet | Table | Estimates

Rendered fromBeadSorted.Saliva.EPIC.rmdusingknitr::rmarkdown

Last update: 2022-06-08
Started: 2020-03-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
DNA Methylation RGChannelSet	BeadSorted.Saliva.EPIC
Cell Proportion Association Table	BeadSorted.Saliva.EPIC.compTable
Estimated cell proportion for samples	BeadSorted.Saliva.EPIC.estimates