Gobbi A, Iorio F, Albanese D, Jurman G, Saez-Rodriguez J (2022). BiRewire: High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals). R package version 3.44.0, https://www.bioconductor.org/packages/release/bioc/html/BiRewire.html.

Gobbi A, Iorio F, Dawson K, Wedge D, Tamborero D, Alexandrov L, Lopez-Bigas N, Garnett M, Jurman G, Saez-Rodriguez J (2014). “Fast randomization of large genomic datasets while preserving alteration counts.” BMC Bioinformatics, 30(17), 617-623. doi:10.1093/bioinformatics/btu474. http://bioinformatics.oxfordjournals.org/content/30/17/i617.full.pdf+html.

Iorio F, Bernardo-Faura M, Gobbi A, Cokelaer T, Jurman G, Saez-Rodriguez J (542). “Efficient randomization of biologicalnetworks while preserving functionalcharacterization of individual nodes.” BMC Bioinformatics, 17(1), 617-623. doi:10.1186/s12859-016-1402-1. http://dx.doi.org/10.1186/s12859-016-1402-1.

Corresponding BibTeX entries:

  @Manual{,
    title = {{BiRewire}: High-performing routines for the randomization
      of a bipartite graph (or a binary event matrix), undirected and
      directed signed graph preserving degree distribution (or marginal
      totals)},
    author = {A. Gobbi and F. Iorio and D. Albanese and G Jurman and J.
      Saez-Rodriguez},
    year = {2022},
    note = {R package version 3.44.0},
    url =
      {https://www.bioconductor.org/packages/release/bioc/html/BiRewire.html},
  }

  @Article{,
    title = {Fast randomization of large genomic datasets while
      preserving alteration counts},
    author = {A. Gobbi and F. Iorio and K.J. Dawson and D.C. Wedge and
      D. Tamborero and L. Alexandrov and N. Lopez-Bigas and M.J.
      Garnett and G Jurman and J. Saez-Rodriguez},
    doi = {10.1093/bioinformatics/btu474},
    journal = {BMC Bioinformatics},
    number = {17},
    volume = {30},
    pages = {617-623},
    year = {2014},
    url =
      {http://bioinformatics.oxfordjournals.org/content/30/17/i617.full.pdf+html},
  }

  @Article{,
    title = {Efficient randomization of biologicalnetworks while
      preserving functionalcharacterization of individual nodes},
    author = {F. Iorio and M. Bernardo-Faura and A. Gobbi and T.
      Cokelaer and G Jurman and J. Saez-Rodriguez},
    doi = {10.1186/s12859-016-1402-1},
    journal = {BMC Bioinformatics},
    number = {1},
    volume = {17},
    pages = {617-623},
    year = {542},
    url = {http://dx.doi.org/10.1186/s12859-016-1402-1},
  }