| Title: | Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub) |
|---|---|
| Description: | The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R. |
| Authors: | Satoshi Kume [aut, cre] (ORCID: <https://orcid.org/0000-0001-7481-2843>), Kozo Nishida [aut] (ORCID: <https://orcid.org/0000-0001-8501-7319>) |
| Maintainer: | Satoshi Kume <[email protected]> |
| License: | Artistic-2.0 |
| Version: | 1.20.0 |
| Built: | 2026-10-10 11:16:32 UTC |
| Source: | https://github.com/bioc/BioImageDbs |
The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.
The DESCRIPTION file:
| Package: | BioImageDbs |
| Type: | Package |
| Title: | Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub) |
| Version: | 1.20.0 |
| Encoding: | UTF-8 |
| Authors@R: | c( person (given = "Satoshi", family = "Kume", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0001-7481-2843")), person(given = "Kozo", family = "Nishida", role = c("aut"), email = "[email protected]", comment = c(ORCID = "0000-0001-8501-7319")) ) |
| Depends: | R (>= 4.1.0) |
| Imports: | ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum |
| Suggests: | knitr, BiocStyle, purrr |
| Description: | The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R. |
| VignetteBuilder: | knitr |
| License: | Artistic-2.0 |
| URL: | https://kumes.github.io/BioImageDbs/ |
| LazyLoad: | yes |
| biocViews: | ExperimentHub, ExperimentData, CellCulture, Tissue |
| RoxygenNote: | 7.1.1 |
| Config/pak/sysreqs: | cmake libfftw3-dev make libmagick++-dev gsfonts texlive libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev libssl-dev zlib1g-dev |
| Repository: | Bioconductor 3.23 |
| Date/Publication: | 2026-04-28 12:35:08 UTC |
| RemoteUrl: | https://github.com/bioc/BioImageDbs |
| RemoteRef: | RELEASE_3_23 |
| RemoteSha: | bf306dd7f22d7202c50882362da4b6e68b47ee15 |
| Author: | Satoshi Kume [aut, cre] (ORCID: <https://orcid.org/0000-0001-7481-2843>), Kozo Nishida [aut] (ORCID: <https://orcid.org/0000-0001-8501-7319>) |
| Maintainer: | Satoshi Kume <[email protected]> |
Index of help topics:
BioImageDbs-package Bio- and biomedical imaging dataset for machine
learning and deep learning (for ExperimentHub)
Satoshi Kume [aut, cre] (ORCID: <https://orcid.org/0000-0001-7481-2843>), Kozo Nishida [aut] (ORCID: <https://orcid.org/0000-0001-8501-7319>)
Maintainer: Satoshi Kume <[email protected]>
ls("package:BioImageDbs") # This is empty packagels("package:BioImageDbs") # This is empty package