Package: BioNAR
Title: Biological Network Analysis in R
Version: 1.14.0
Authors@R: c(
    person("Colin", "Mclean", 
        email="Colin.D.Mclean@ed.ac.uk", role="aut"), 
    person("Anatoly", "Sorokin", 
        email="lptolik@gmail.com", role=c("aut", "cre")), 
    person("Oksana", "Sorokina", 
        email="oksana.sorokina@ed.ac.uk", role="aut"),
    person("J. Douglas", "Armstrong", 
        email="Douglas.Armstrong@ed.ac.uk", role = c("aut","fnd")),
    person("T. Ian", "Simpson", 
        email="Ian.Simpson@ed.ac.uk", role = c("ctb","fnd")) )
Description: the R package BioNAR, developed to step by step analysis
        of PPI network. The aim is to quantify and rank each protein’s
        simultaneous impact into multiple complexes based on network
        topology and clustering. Package also enables estimating of
        co-occurrence of diseases across the network and specific
        clusters pointing towards shared/common mechanisms.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 3.5.0), igraph (>= 2.0.1.1), poweRlaw, latex2exp,
        RSpectra, Rdpack
Imports: stringr, viridis, fgsea, grid, methods, AnnotationDbi, dplyr,
        GO.db, org.Hs.eg.db (>= 3.19.1), rSpectral, WGCNA, ggplot2,
        ggrepel, minpack.lm, cowplot, data.table, scales, stats, Matrix
RdMacros: Rdpack
Suggests: knitr, BiocStyle, magick, rmarkdown, igraphdata, testthat (>=
        3.0.0), vdiffr, devtools, pander, plotly, randomcoloR
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/lptolik/BioNAR/issues/
biocViews: Software, GraphAndNetwork, Network
LazyData: true
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:59:15 UTC
RemoteUrl: https://github.com/bioc/BioNAR
RemoteRef: RELEASE_3_23
RemoteSha: 19b17fe067f296b707e3843d122e28c4acca67ed
NeedsCompilation: no
Packaged: 2026-07-03 12:03:19 UTC; root
Author: Colin Mclean [aut],
  Anatoly Sorokin [aut, cre],
  Oksana Sorokina [aut],
  J. Douglas Armstrong [aut, fnd],
  T. Ian Simpson [ctb, fnd]
Maintainer: Anatoly Sorokin <lptolik@gmail.com>