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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "BioPlex" in publications use:'
type: software
license: Artistic-2.0
title: 'BioPlex: R-side access to BioPlex protein-protein interaction data'
version: 1.18.0
doi: 10.1093/bioinformatics/btad091
identifiers:
- type: doi
  value: 10.32614/CRAN.package.BioPlex
abstract: The BioPlex package implements access to the BioPlex protein-protein interaction
  networks and related resources from within R. Besides protein-protein interaction
  networks for HEK293 and HCT116 cells, this includes access to CORUM protein complex
  data, and transcriptome and proteome data for the two cell lines. Functionality
  focuses on importing the various data resources and storing them in dedicated Bioconductor
  data structures, as a foundation for integrative downstream analysis of the data.
authors:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig_geistlinger@hms.harvard.edu
- family-names: Gentleman
  given-names: Robert
preferred-citation:
  type: article
  title: 'BioPlexR and BioPlexPy: integrated data products for the analysis of human
    protein interactions'
  authors:
  - family-names: Geistlinger
    given-names: Ludwig
    email: ludwig_geistlinger@hms.harvard.edu
  - family-names: Vargas
    given-names: Roger
  - family-names: Lee
    given-names: Tyrone
  - family-names: Pan
    given-names: Joshua
  - family-names: Huttlin
    given-names: Edward
  - family-names: Gentleman
    given-names: Robert
  year: '2023'
  journal: Bioinformatics
  doi: 10.1093/bioinformatics/btad091
repository: https://bioconductor.org/
repository-code: https://github.com/ccb-hms/BioPlex
commit: a976b809e971ed53278d22676c4403dd7b372a7a
url: https://github.com/ccb-hms/BioPlex
date-released: '2026-04-28'
contact:
- family-names: Geistlinger
  given-names: Ludwig
  email: ludwig_geistlinger@hms.harvard.edu