Package: CAFE 1.48.0

Sander Bollen

CAFE: Chromosmal Aberrations Finder in Expression data

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Authors:Sander Bollen

CAFE_1.48.0.tar.gz
CAFE_1.48.0.zip(r-4.7)CAFE_1.48.0.zip(r-4.6)CAFE_1.48.0.zip(r-4.5)
CAFE_1.48.0.tgz(r-4.6-any)CAFE_1.48.0.tgz(r-4.5-any)
CAFE_1.48.0.tar.gz(r-4.7-any)CAFE_1.48.0.tar.gz(r-4.6-any)
CAFE_1.48.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CAFE/json (API)
NEWS

# Install 'CAFE' in R:
install.packages('CAFE', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:CAFE-1.49.0(bioc 3.24)CAFE-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressionmicroarrayonechannelgenesetenrichment

4.30 score 5 scripts 452 downloads 251 mentions 13 exports 131 dependencies

Last updated from:ba98ae1a1e (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR227
linux-devel-x86_64WARNING467
source / vignettesOK390
linux-release-x86_64WARNING526
macos-release-arm64WARNING269
macos-oldrel-arm64WARNING280
windows-develWARNING426
windows-releaseWARNING420
windows-oldrelWARNING397
wasm-releaseOK169

Exports:armStatsbandStatschromosomeStatscliSubsetdiscontPlotdiscontSmoothfacetPlotfisher.methodguiSubsetProcessCelsrawPlotslidPlotslidSmooth

Dependencies:abindaffyaffyioannotateAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecpp11crayoncurldata.tableDBIDelayedArraydichromatdigestensembldbevaluatefarverfastmapfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbioggplot2gluegraphgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslOrganismDbipkgconfigplyrpngpreprocessCoreProtGenericsR6rappdirsRBGLRColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystinytexUCSC.utilsVariantAnnotationvctrsviridisLitewithrxfunXMLxtableXVectoryaml

Manual

Rendered fromCAFE-manual.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2014-03-20
Started: 2014-03-20