Package: CBN2Path 1.2.0
William Choi-Kim
CBN2Path: CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
Authors:
CBN2Path_1.2.0.tar.gz
CBN2Path_1.2.0.tgz(r-4.6-x86_64)CBN2Path_1.2.0.tgz(r-4.6-arm64)CBN2Path_1.2.0.tgz(r-4.5-x86_64)CBN2Path_1.2.0.tgz(r-4.5-arm64)
CBN2Path_1.2.0.tar.gz(r-4.7-arm64)CBN2Path_1.2.0.tar.gz(r-4.7-x86_64)CBN2Path_1.2.0.tar.gz(r-4.6-arm64)CBN2Path_1.2.0.tar.gz(r-4.6-x86_64)
CBN2Path_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CBN2Path/json (API)
| # Install 'CBN2Path' in R: |
| install.packages('CBN2Path', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rockwillck/cbn2path/issues
On BioConductor:CBN2Path-1.3.0(bioc 3.24)CBN2Path-1.2.0(bioc 3.23)
softwarestatisticalmethodgraphandnetworkbayesianpathwaysgsl
Last updated from:5c11e25c9f (on RELEASE_3_23). Checks:2 ERROR, 13 WARNING, 1 OK. Indexed: no.
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| wasm-release | OK | 163 |
Exports:base2Indexingbase2IndVecbcbnctcbnctcbnSingleedgeMarginalizedgenerateDatagenerateMatrixGenotypesgenerateTCGAMatrixgenotypeFeasibilitygenotypeMatrixMutatorgetExamplesgetRawTCGADatahcbnhcbnSinglejensenShannonDivergencepathEdgeMapperpathNormalizationpathProbCBNpathProbQuartetBCBNpathProbQuartetCTCBNpathProbQuartetHCBNpathProbQuartetRCBNpathProbSSWMpathwayCompatibilityQuartetpathwayFeasibilitypathwayGenotypeCompatibilitypathwayWeightingRCBNpermutationsposetWeightingRCBNpredictabilityreadLambdareadPatternreadPosetreadTimeSpocktransitiveClosurevisualizeCBNModelvisualizeFitnessLandscapevisualizeProbabilities
Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbiomaRtBiostringsbitbit64blobcachemclicliprcodacodetoolscowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdownloaderdplyrevaluatefarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtablehighrhmshttrhttr2igraphIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloreadrrlangRSQLitervestS4ArraysS4VectorsS7scalesselectrSeqinfosnowSparseArraystringistringrSummarizedExperimentsyssystemfontsTCGAbiolinksTCGAbiolinksGUI.datatibbletidygraphtidyrtidyselecttweenrtzdbutf8vctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryaml
