Introduction | Installation | Cite our work | Preparing the genotype matrix | The CT-CBN model | The H-CBN model | Analysis of cancer progression pathways | The R-CBN algorithm | The B-CBN method | Analysis of fitness landscapes | Session Info | References
Package: CBN2Path 1.2.0
William Choi-Kim
CBN2Path: CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
Authors:
CBN2Path_1.2.0.tar.gz
CBN2Path_1.2.0.tgz(r-4.6-x86_64)CBN2Path_1.2.0.tgz(r-4.6-arm64)CBN2Path_1.2.0.tgz(r-4.5-x86_64)CBN2Path_1.2.0.tgz(r-4.5-arm64)
CBN2Path_1.2.0.tar.gz(r-4.7-arm64)CBN2Path_1.2.0.tar.gz(r-4.7-x86_64)CBN2Path_1.2.0.tar.gz(r-4.6-arm64)CBN2Path_1.2.0.tar.gz(r-4.6-x86_64)
CBN2Path_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CBN2Path/json (API)
| # Install 'CBN2Path' in R: |
| install.packages('CBN2Path', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rockwillck/cbn2path/issues
On BioConductor:CBN2Path-1.3.0(bioc 3.24)CBN2Path-1.2.0(bioc 3.23)
softwarestatisticalmethodgraphandnetworkbayesianpathwaysgsl
Last updated from:5c11e25c9f (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: no.
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| bioc-checks | ERROR | 234 | ||
| linux-devel-arm64 | NOTE | 522 | ||
| linux-devel-x86_64 | NOTE | 607 | ||
| source / vignettes | OK | 648 | ||
| linux-release-arm64 | NOTE | 595 | ||
| linux-release-x86_64 | NOTE | 608 | ||
| macos-release-arm64 | WARNING | 579 | ||
| macos-release-x86_64 | WARNING | 670 | ||
| macos-oldrel-arm64 | WARNING | 563 | ||
| macos-oldrel-x86_64 | WARNING | 695 | ||
| windows-devel | NOTE | 149 | ||
| windows-release | NOTE | 100 | ||
| windows-oldrel | NOTE | 85 | ||
| wasm-release | OK | 207 |
Exports:base2Indexingbase2IndVecbcbnctcbnctcbnSingleedgeMarginalizedgenerateDatagenerateMatrixGenotypesgenerateTCGAMatrixgenotypeFeasibilitygenotypeMatrixMutatorgetExamplesgetRawTCGADatahcbnhcbnSinglejensenShannonDivergencepathEdgeMapperpathNormalizationpathProbCBNpathProbQuartetBCBNpathProbQuartetCTCBNpathProbQuartetHCBNpathProbQuartetRCBNpathProbSSWMpathwayCompatibilityQuartetpathwayFeasibilitypathwayGenotypeCompatibilitypathwayWeightingRCBNpermutationsposetWeightingRCBNpredictabilityreadLambdareadPatternreadPosetreadTimeSpocktransitiveClosurevisualizeCBNModelvisualizeFitnessLandscapevisualizeProbabilities
Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbiomaRtBiostringsbitbit64blobcachemclicliprcodacodetoolscowplotcpp11crayoncurldata.tableDBIdbplyrDelayedArraydigestdownloaderdplyrevaluatefarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtablehighrhmshttrhttr2igraphIRangesisobandjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpatchworkpillarpkgconfigplyrpngpolyclipprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppArmadilloreadrrlangRSQLitervestS4ArraysS4VectorsS7scalesselectrSeqinfosnowSparseArraystringistringrSummarizedExperimentsyssystemfontsTCGAbiolinksTCGAbiolinksGUI.datatibbletidygraphtidyrtidyselecttweenrtzdbutf8vctrsviridisviridisLitevroomwithrxfunXMLxml2XVectoryaml
