Package: CCPlotR 1.10.0

Sarah Ennis

CCPlotR: Plots For Visualising Cell-Cell Interactions

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Authors:Sarah Ennis [aut, cre], Pilib Ó Broin [aut], Eva Szegezdi [aut]

CCPlotR_1.10.0.tar.gz
CCPlotR_1.10.0.zip(r-4.7)CCPlotR_1.10.0.zip(r-4.6)CCPlotR_1.10.0.zip(r-4.5)
CCPlotR_1.10.0.tgz(r-4.6-any)CCPlotR_1.10.0.tgz(r-4.5-any)
CCPlotR_1.10.0.tar.gz(r-4.7-any)CCPlotR_1.10.0.tar.gz(r-4.6-any)
CCPlotR_1.10.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CCPlotR/json (API)
NEWS

# Install 'CCPlotR' in R:
install.packages('CCPlotR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sarah145/ccplotr/issues

Datasets:

On BioConductor:CCPlotR-1.11.0(bioc 3.24)CCPlotR-1.10.0(bioc 3.23)

singlecellnetworkvisualizationcellbiologysystemsbiology

6.08 score 47 stars 17 scripts 9 exports 88 dependencies

Last updated from:bad00115ee (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING181
linux-devel-x86_64NOTE278
source / vignettesOK244
linux-release-x86_64NOTE235
macos-release-arm64NOTE114
macos-oldrel-arm64NOTE100
windows-develNOTE167
windows-releaseNOTE150
windows-oldrelNOTE156
wasm-releaseOK131

Exports:cc_arrowcc_circoscc_dotplotcc_heatmapcc_networkcc_sigmoidgeom_sigmoidpaletteMartinStatSigmoid

Dependencies:base64encBiocGenericscachemcirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcpp11crayoncurldigestdoParalleldplyrfarverfastmapforcatsforeachfsgenericsGetoptLongggforceggfunggh4xggplot2ggraphggrepelggtextGlobalOptionsgluegraphlayoutsgridExtragridtextgtableigraphIRangesisobanditeratorsjpegjsonlitelabelinglatticelifecyclelitedownmagrittrmarkdownMASSMatrixmatrixStatsmemoisepatchworkpillarpkgconfigplyrpngpolyclippurrrR6rappdirsRColorBrewerRcppRcppArmadillorjsonrlangS4VectorsS7scalesscatterpieshapestringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrxfunxml2yulab.utils

Generating visualisations of cell-cell interactions with CCPlotR

Sarah Ennis, Pilib Ó Broin, Eva Szegezdi

Rendered fromCCPlotR_visualisations.Rmdusingknitr::rmarkdownon Jun 21 2026.

Last update: 2023-10-06
Started: 2023-10-06