Package: CHRONOS 1.40.0

Panos Balomenos

CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Authors:Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

CHRONOS_1.40.0.tar.gz
CHRONOS_1.40.0.zip(r-4.7)CHRONOS_1.40.0.zip(r-4.6)CHRONOS_1.40.0.zip(r-4.5)
CHRONOS_1.40.0.tgz(r-4.6-any)CHRONOS_1.40.0.tgz(r-4.5-any)
CHRONOS_1.40.0.tar.gz(r-4.7-any)CHRONOS_1.40.0.tar.gz(r-4.6-any)
CHRONOS_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CHRONOS/json (API)
NEWS

# Install 'CHRONOS' in R:
install.packages('CHRONOS', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:CHRONOS-1.41.0(bioc 3.24)CHRONOS-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

systemsbiologygraphandnetworkpathwayskeggopenjdk

3.89 score 13 scripts 390 downloads 3 mentions 16 exports 77 dependencies

Last updated from:ae77439d0d (on RELEASE_3_23). Checks:3 ERROR, 5 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR192
linux-devel-x86_64NOTE307
source / vignettesOK253
linux-release-x86_64NOTE308
macos-release-arm64ERROR406
macos-oldrel-arm64ERROR358
windows-develNOTE516
windows-releaseNOTE229
windows-oldrelNOTE604
wasm-releaseOK152

Exports:CHRONOSrunconvertMiRNANomenclatureconvertNomenclaturecreatePathwayGraphsdownloadKEGGPathwayListdownloadMiRecordsdownloadPathwaysextractLinearSubpathwaysextractNonLinearSubpathwaysgetEdgeTypesimportExpressionspathwayMeasuresscoreSubpathwayssubpathwayKEGGmapsubpathwayMiRNAsvisualizeResults

Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobcachemcirclizeclicodetoolscolorspacecpp11crayoncurlDBIdbplyrdoParalleldplyrfastmapfilelockforeachgenericsGlobalOptionsgluegraphhmshttrhttr2igraphIRangesiteratorsjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslopenxlsxpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRBGLRcppRCurlrJavarlangRSQLiteS4VectorsSeqinfoshapestringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2XVectorzip

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Rendered fromCHRONOS.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2017-04-05
Started: 2016-04-18