Table of Contents | Package Setup | User Input | Default Run | Citation
Package: CHRONOS 1.40.0
Panos Balomenos
CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.
Authors:
CHRONOS_1.40.0.tar.gz
CHRONOS_1.40.0.zip(r-4.7-any)CHRONOS_1.40.0.zip(r-4.6-any)CHRONOS_1.40.0.zip(r-4.5-any)
CHRONOS_1.40.0.tgz(r-4.6-any)CHRONOS_1.40.0.tgz(r-4.5-any)
CHRONOS_1.40.0.tar.gz(r-4.7-any)CHRONOS_1.40.0.tar.gz(r-4.6-any)
CHRONOS_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CHRONOS/json (API)
| # Install 'CHRONOS' in R: |
| install.packages('CHRONOS', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:CHRONOS-1.41.0(bioc 3.24)CHRONOS-1.40.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
systemsbiologygraphandnetworkpathwayskeggopenjdk
Last updated from:ae77439d0d (on RELEASE_3_23). Checks:3 ERROR, 5 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 174 | ||
| linux-devel | NOTE | 355 | ||
| source / vignettes | OK | 299 | ||
| linux-release | NOTE | 252 | ||
| macos-release | ERROR | 414 | ||
| macos-oldrel | ERROR | 502 | ||
| windows-devel | NOTE | 205 | ||
| windows-release | NOTE | 180 | ||
| windows-oldrel | NOTE | 206 | ||
| wasm-release | OK | 126 |
Exports:CHRONOSrunconvertMiRNANomenclatureconvertNomenclaturecreatePathwayGraphsdownloadKEGGPathwayListdownloadMiRecordsdownloadPathwaysextractLinearSubpathwaysextractNonLinearSubpathwaysgetEdgeTypesimportExpressionspathwayMeasuresscoreSubpathwayssubpathwayKEGGmapsubpathwayMiRNAsvisualizeResults
Dependencies:AnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64bitopsblobcachemcirclizeclicodetoolscolorspacecpp11crayoncurlDBIdbplyrdoParalleldplyrfastmapfilelockforeachgenericsGlobalOptionsgluegraphhmshttrhttr2igraphIRangesiteratorsjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslopenxlsxpillarpkgconfigpngprettyunitsprogresspurrrR6RBGLRcppRCurlrJavarlangRSQLiteS4VectorsSeqinfoshapestringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2XVectorzip
