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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CODEX" in publications use:'
type: software
license: GPL-2.0-only
title: 'CODEX: A Normalization and Copy Number Variation Detection Method for Whole
  Exome Sequencing'
version: 1.44.0
doi: 10.32614/CRAN.package.CODEX
abstract: A normalization and copy number variation calling procedure for whole exome
  DNA sequencing data. CODEX relies on the availability of multiple samples processed
  using the same sequencing pipeline for normalization, and does not require matched
  controls. The normalization model in CODEX includes terms that specifically remove
  biases due to GC content, exon length and targeting and amplification efficiency,
  and latent systemic artifacts. CODEX also includes a Poisson likelihood-based recursive
  segmentation procedure that explicitly models the count-based exome sequencing data.
authors:
- family-names: Jiang
  given-names: Yuchao
  email: yuchaoj@wharton.upenn.edu
- family-names: Zhang
  given-names: Nancy R.
repository: https://bioc-release.r-universe.dev
commit: 6ddfc4ffeb9b034cae3e52cc3430a04e0cd1a312
date-released: '2026-04-28'
contact:
- family-names: Jiang
  given-names: Yuchao
  email: yuchaoj@wharton.upenn.edu