| Title: | Annotations for City of Hope CpG Island Analysis Pipeline |
|---|---|
| Description: | Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms |
| Authors: | Charles Warden |
| Maintainer: | Charles Warden <[email protected]> |
| License: | GPL-3 |
| Version: | 1.48.0 |
| Built: | 2026-10-10 11:05:16 UTC |
| Source: | https://github.com/bioc/COHCAPanno |
Contains chromosome, location, gene, and CpG island information for probes on 27k Methylation array. Annotation data comes from HumanMethylation27_270596_v.1.2.bpm.
Annotation File Mappings:
COHCAP "SiteID" = Name
COHCAP "Chr" = Chr
COHCAP "Loc" = MapInfo (NCBI 36.1 / hg18)
COHCAP "Gene" = Symbol
COHCAP "Island" = CPG_ISLAND
data(COHCAP.27k)data(COHCAP.27k)
27k Array: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8490
Annotation File: http://www.ebi.ac.uk/arrayexpress/files/A-GEOD-8490/A-GEOD-8490.adf.txt
Contains chromosome, location, gene, and CpG island information for probes on 450k Methylation array (except for rs## probes, which are ignored). Annotation data comes from HumanMethylation450_15017482_v.1.1.bpm.
Annotation File Mappings:
COHCAP "SiteID" = IlmnID
COHCAP "Chr" = CHR
COHCAP "Loc" = MAPINFO (hg19)
COHCAP "Gene" = UCSC_RefGene_Name
COHCAP "Island" = HMM_Island
data(COHCAP.450k.HMM)data(COHCAP.450k.HMM)
450k Array: http://www.illumina.com/products/methylation_450_beadchip_kits.ilmn
Annotation File: http://support.illumina.com/downloads/humanmethylation450_15017482_v12.ilmn
Contains chromosome, location, gene, and CpG island information for probes on 450k Methylation array (except for rs## probes, which are ignored). Annotation data comes from HumanMethylation450_15017482_v.1.1.bpm.
Annotation File Mappings:
COHCAP "SiteID" = IlmnID
COHCAP "Chr" = CHR
COHCAP "Loc" = MAPINFO (hg19)
COHCAP "Gene" = UCSC_RefGene_Name
COHCAP "Island" = UCSC_CpG_Islands_Name
data(COHCAP.450k.UCSC)data(COHCAP.450k.UCSC)
450k Array: http://www.illumina.com/products/methylation_450_beadchip_kits.ilmn
Annotation File: http://support.illumina.com/downloads/humanmethylation450_15017482_v12.ilmn