# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CPSM" in publications use:'
type: software
license: GPL-3.0-only
title: 'CPSM: CPSM: Cancer patient survival model'
version: 1.4.0
doi: 10.1101/2024.11.14.623597
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CPSM
abstract: CPSM provides a comprehensive computational pipeline for predicting survival
  probability and risk groups in cancer patients. The package includes steps for data
  preprocessing, training/test split, and normalization. It enables feature selection
  using univariate survival analysis and computes a LASSO-based prognostic index (PI)
  score. CPSM supports the development of predictive models using various feature
  sets and offers a suite of visualization tools, including survival curves based
  on predicted probabilities, barplots for predicted mean and median survival times,
  KM plots overlaid with individual survival predictions, and nomograms for estimating
  1-, 3-, 5-, and 10-year survival probabilities. This makes CPSM a versatile tool
  for survival analysis in cancer research.
authors:
- family-names: Kaur
  given-names: Harpreet
  email: hks04180@gmail.com
  orcid: https://orcid.org/0000-0003-0421-8341
- family-names: Das
  given-names: Pijush
  email: topijush@gmail.com
- family-names: Camphausen
  given-names: Kevin
  email: camphauk@mail.nih.gov
- family-names: Shankavaram
  given-names: Uma
  email: uma@mail.nih.gov
preferred-citation:
  type: article
  title: 'CPSM: R-package of an Automated Machine Learning Pipeline for Predicting
    the Survival Probability of Single Cancer Patients'
  authors:
  - family-names: Kaur
    given-names: Harpreet
    email: hks04180@gmail.com
    orcid: https://orcid.org/0000-0003-0421-8341
  - family-names: Das
    given-names: Pijush
    email: topijush@gmail.com
  - family-names: Camphausen
    given-names: Kevin
    email: camphauk@mail.nih.gov
  - family-names: Shankavaram
    given-names: Uma
    email: uma@mail.nih.gov
  journal: bioRxiv
  year: '2024'
  doi: 10.1101/2024.11.14.623597
  url: https://doi.org/10.1101/2024.11.14.623597
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/hks5august/CPSM
commit: ec740c5547526959826ac67f9ca30c438ac819cd
url: https://github.com/hks5august/CPSM/
date-released: '2026-04-28'
contact:
- family-names: Kaur
  given-names: Harpreet
  email: hks04180@gmail.com
  orcid: https://orcid.org/0000-0003-0421-8341