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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CSAR" in publications use:'
type: software
license: Artistic-2.0
title: 'CSAR: Statistical tools for the analysis of ChIP-seq data'
version: 1.64.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CSAR
abstract: 'Statistical tools for ChIP-seq data analysis. The package includes the
  statistical method described in Kaufmann et al. (2009) PLoS Biology: 7(4):e1000090.
  Briefly, Taking the average DNA fragment size subjected to sequencing into account,
  the software calculates genomic single-nucleotide read-enrichment values. After
  normalization, sample and control are compared using a test based on the Poisson
  distribution. Test statistic thresholds to control the false discovery rate are
  obtained through random permutation.'
authors:
- family-names: Muino
  given-names: Jose M
  email: jose.muino@live.com
preferred-citation:
  type: article
  title: 'ChIP-seq Analysis in R (CSAR): An R package for the statistical detection
    of protein-bound genomic regions'
  authors:
  - family-names: Muino
    given-names: JM
  - family-names: Kaufmann
    given-names: K
  - family-names: Ham
    given-names: RCHJ
    name-particle: van
  - family-names: Angenent
    given-names: GC
  - family-names: Krajewski
    given-names: P
  journal: Plant Methods
  year: '2011'
  volume: '7'
  issue: '1'
  notes: R package version 4.6.0
repository: https://bioc-release.r-universe.dev
commit: ee5e58c3ce709c8ea2e02986c375e703679a9ad9
date-released: '2025-07-24'
contact:
- family-names: Muino
  given-names: Jose M
  email: jose.muino@live.com