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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CSOA" in publications use:'
type: software
license: MIT
title: 'CSOA: Calculate per-cell gene signature scores in scRNA-seq data using cell
  set overlaps'
version: 1.2.0
doi: 10.32614/CRAN.package.CSOA
abstract: Cell Set Overlap Analysis (CSOA) is a tool for calculating per-cell gene
  signature scores in an scRNA-seq dataset. CSOA constructs a set for each gene in
  the signature, consisting of the cells that highly express the gene. Next, all overlaps
  of pairs of cell sets are computed, ranked, filtered and scored. The CSOA per-cell
  score is calculated by summing up all products of the overlap scores and the min-max-normalized
  expression of the two involved genes. CSOA can run on a Seurat object, a SingleCellExperiment
  object, a matrix and a dgCMatrix.
authors:
- family-names: Stoica
  given-names: Andrei-Florian
  email: andreistoica@foxmail.com
  orcid: https://orcid.org/0000-0002-5253-0826
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/andrei-stoica26/CSOA
commit: c99f3964a387ffdef22415439e9258e46f80e087
url: https://github.com/andrei-stoica26/CSOA
date-released: '2026-04-28'
contact:
- family-names: Stoica
  given-names: Andrei-Florian
  email: andreistoica@foxmail.com
  orcid: https://orcid.org/0000-0002-5253-0826