Package: ChIPComp 1.40.0
Li Chen
ChIPComp: Quantitative comparison of multiple ChIP-seq datasets
ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.
Authors:
ChIPComp_1.40.0.tar.gz
ChIPComp_1.40.0.zip(r-4.5)
ChIPComp_1.40.0.tgz(r-4.5-x86_64)ChIPComp_1.40.0.tgz(r-4.5-arm64)
ChIPComp_1.40.0.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ChIPComp/json (API)
NEWS
| # Install 'ChIPComp' in R: |
| install.packages('ChIPComp', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- seqData - A 'ChIPComp' object.
On BioConductor:ChIPComp-1.41.0(bioc 3.23)ChIPComp-1.40.0(bioc 3.22)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
chipseqsequencingtranscriptiongeneticscoveragemultiplecomparisondataimport
Last updated from:0b95bdfe76 (on RELEASE_3_22). Checks:1 FAILURE, 7 FAIL, 1 OK, 5 NOTE. Indexed: no.
The latest version of this package failed to build. Look at thebuild logs for more information.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | FAILURE | 258 | ||
| linux-devel-arm64 | FAIL | 212 | ||
| linux-devel-x86_64 | FAIL | 266 | ||
| source / vignettes | OK | 365 | ||
| linux-release-arm64 | NOTE | 372 | ||
| linux-release-x86_64 | NOTE | 454 | ||
| macos-release-arm64 | FAIL | 124 | ||
| macos-release-x86_64 | FAIL | 284 | ||
| macos-oldrel-arm64 | NOTE | 257 | ||
| macos-oldrel-x86_64 | NOTE | 704 | ||
| windows-devel | FAIL | 180 | ||
| windows-release | FAIL | 176 | ||
| windows-oldrel | NOTE | 365 | ||
| wasm-release | FAIL | 239 |
Exports:ChIPCompmakeConfmakeCountSet
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomeBSgenome.Hsapiens.UCSC.hg19BSgenome.Mmusculus.UCSC.mm9cigarillocodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticelimmaMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystatmodSummarizedExperimentsysXMLXVectoryaml
