Overview | Installation | Available Datasets | Integration with TFEA.ChIP | Session Info
Package: ChIPDBData 1.2.0
Yosra Berrouayel
ChIPDBData: ChIP-seq Target Databases for TFEA.ChIP
Provides curated gene target databases derived from ChIP-seq datasets, formatted as ChIPDB objects for use with TFEA.ChIP.
Authors:
ChIPDBData_1.2.0.tar.gz
ChIPDBData_1.2.0.tar.gz(r-4.7-any)ChIPDBData_1.2.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ChIPDBData/json (API)
| # Install 'ChIPDBData' in R: |
| install.packages('ChIPDBData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yberda/chipdbdata/issues
On BioConductor:ChIPDBData-1.3.0(data/experiment 3.24)ChIPDBData-1.2.0(data/experiment 3.23)
experimentdataexperimenthubhomo_sapiens_dataencodesequencingdatachip-seqenrichment-analysistfdatapkg
Last updated from:bb6cf18332 (on RELEASE_3_23). Checks:1 NOTE, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 192 | ||
| linux-devel | OK | 493 | ||
| source / vignettes | OK | 422 | ||
| linux-release | OK | 323 |
Exports:getChIPDB
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve ChIPDB dataset from ExperimentHub | getChIPDB |
