Package: ChIPQC
Type: Package
Title: Quality metrics for ChIPseq data
Version: 1.48.3
Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark
Maintainer: Tom Carroll <tc.infomatics@gmail.com>, Rory Stark
 <bioconductor@starkhome.com>
Description: Quality metrics for ChIPseq data.
biocViews: Sequencing, ChIPSeq, QualityControl, ReportWriting
License: GPL (>= 3)
LazyLoad: yes
Depends: R (>= 3.5.0), ggplot2, DiffBind, GenomicRanges (>= 1.17.19),
        BiocParallel
Imports: BiocGenerics (>= 0.11.3), S4Vectors (>= 0.1.0), IRanges (>=
        1.99.17), Rsamtools (>= 1.17.28), GenomicAlignments (>=
        1.1.16), chipseq (>= 1.12.0), gtools, methods, reshape2,
        Biobase, grDevices, stats, utils, GenomicFeatures,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg18.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene,
        TxDb.Mmusculus.UCSC.mm9.knownGene,
        TxDb.Rnorvegicus.UCSC.rn4.ensGene,
        TxDb.Celegans.UCSC.ce6.ensGene,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene
Suggests: BiocStyle
Collate: ChIPQCsample-class.R ChIPQCexperiment-class.R sampleQC.R
        ChIPQC_IF.R plots.r dbaplots.R utilities.R report.r zzz.R
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-05-08 17:30:38 UTC
RemoteUrl: https://github.com/bioc/ChIPQC
RemoteRef: RELEASE_3_23
RemoteSha: 3324b040017cc9573aadec9b9bfcbbfcee0956c3
NeedsCompilation: no
Packaged: 2026-11-01 18:04:08 UTC; root