# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ChromSCape" in publications use:'
type: software
license: GPL-3.0-only
title: 'ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App'
version: 1.22.0
doi: 10.1038/s41467-020-19542-x
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ChromSCape
abstract: 'ChromSCape - Chromatin landscape profiling for Single Cells - is a ready-to-launch
  user-friendly Shiny Application for the analysis of single-cell epigenomics datasets
  (scChIP-seq, scATAC-seq, scCUT&Tag, ...) from aligned data to differential analysis
  & gene set enrichment analysis. It is highly interactive, enables users to save
  their analysis and covers a wide range of analytical steps: QC, preprocessing, filtering,
  batch correction, dimensionality reduction, vizualisation, clustering, differential
  analysis and gene set analysis.'
authors:
- family-names: Prompsy
  given-names: Pacome
  email: pacome.pr@gmail.com
  orcid: https://orcid.org/0000-0003-4375-7583
- family-names: Vallot
  given-names: Celine
  email: celine.vallot@curie.fr
  orcid: https://orcid.org/0000-0003-1601-2359
preferred-citation:
  type: article
  title: 'ChromSCape: Interactive analysis of single-cell epigenomic landscapes with
    ChromSCape'
  authors:
  - family-names: Prompsy
    given-names: Pacome
    email: pacome.pr@gmail.com
    orcid: https://orcid.org/0000-0003-4375-7583
  - family-names: Kirchmeier
    given-names: Pia
  - family-names: Marsolier
    given-names: Justine
  - family-names: Deloger
    given-names: Marc
  - family-names: Servant
    given-names: Nicolas
  - family-names: Vallot
    given-names: Celine
    email: celine.vallot@curie.fr
    orcid: https://orcid.org/0000-0003-1601-2359
  doi: 10.1038/s41467-020-19542-x
  journal: Nature Communications
  year: '2019'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/vallotlab/ChromSCape
commit: dde7f85d8e91c4ff9ee5cd4edc2a1cb4bc83ca68
url: https://github.com/vallotlab/ChromSCape
date-released: '2026-04-28'
contact:
- family-names: Prompsy
  given-names: Pacome
  email: pacome.pr@gmail.com
  orcid: https://orcid.org/0000-0003-4375-7583