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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CircSeqAlignTk" in publications use:'
type: software
license: MIT
title: 'CircSeqAlignTk: End-to-End Analysis of Small RNA-Seq Data from Viroids'
version: 1.14.0
doi: 10.12688/f1000research.127348.2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.CircSeqAlignTk
abstract: CircSeqAlignTk is a toolkit for the analysis of RNA-Seq data derived from
  circular genome sequences, with a primary focus on viroids, circular RNAs typically
  consisting of a few hundred nucleotides. The toolkit supports an end-to-end analysis
  pipeline, from alignment to visualization.
authors:
- family-names: Sun
  given-names: Jianqiang
  email: sun@bitdessin.dev
  orcid: https://orcid.org/0000-0002-3438-3199
preferred-citation:
  type: article
  title: An R package for end-to-end analysis of RNA-seq data for circular genomes
  authors:
  - family-names: Sun
    given-names: Jianqiang
    email: sun@bitdessin.dev
    orcid: https://orcid.org/0000-0002-3438-3199
  - family-names: Fu
    given-names: Xi
  - family-names: Cao
    given-names: Wei
  year: '2024'
  journal: F1000Research
  doi: 10.12688/f1000research.127348.2
  volume: '11'
  start: '1221'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/bitdessin/CircSeqAlignTk
commit: bee728aee25fc79fb5ba6d6633707a9be4bc65e5
url: https://github.com/bitdessin/CircSeqAlignTk
date-released: '2026-04-28'
contact:
- family-names: Sun
  given-names: Jianqiang
  email: sun@bitdessin.dev
  orcid: https://orcid.org/0000-0002-3438-3199