Package: Clomial 1.48.0

Habil Zare

Clomial: Infers clonal composition of a tumor

Clomial fits binomial distributions to counts obtained from Next Gen Sequencing data of multiple samples of the same tumor. The trained parameters can be interpreted to infer the clonal structure of the tumor.

Authors:Habil Zare and Alex Hu

Clomial_1.48.0.tar.gz
Clomial_1.48.0.zip(r-4.7)Clomial_1.48.0.zip(r-4.6)Clomial_1.48.0.zip(r-4.5)
Clomial_1.48.0.tgz(r-4.6-any)Clomial_1.48.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
Clomial/json (API)
NEWS

# Install 'Clomial' in R:
install.packages('Clomial', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Clomial-1.49.0(bioc 3.24)Clomial-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneticvariabilitysequencingclusteringmultiplecomparisonbayesiandnaseqexomeseqtargetedresequencingimmunooncology

4.30 score 3 scripts 369 downloads 10 mentions 7 exports 2 dependencies

Last updated from:3c03557701 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR173
linux-devel-x86_64NOTE215
source / vignettesOK171
linux-release-x86_64NOTE222
macos-release-arm64NOTE162
macos-oldrel-arm64NOTE138
windows-develNOTE160
windows-releaseNOTE192
windows-oldrelNOTE197
wasm-releaseOK100

Exports:choose.bestClomialClomial.generate.dataClomial.iterateClomial.likelihoodcompute.biccompute.errors

Dependencies:matrixStatspermute

A likelihood maximization approach to infer the clonal structure of a cancer using multiple tumor samples

Rendered fromClonal_decomposition_by_Clomial.Rnwusingutils::Sweaveon Jun 02 2026.

Last update: 2021-02-10
Started: 2014-03-10