CoSIAdata Introduction | Using CoSIAdata | Behind the Scenes of CoSIAdata | Accessing CoSIAdata Metadata
Package: CoSIAdata 1.12.0
Amanda D. Clark
CoSIAdata: VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee
Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.
Authors:
CoSIAdata_1.12.0.tar.gz
CoSIAdata_1.12.0.tar.gz(r-4.7-any)CoSIAdata_1.12.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CoSIAdata/json (API)
| # Install 'CoSIAdata' in R: |
| install.packages('CoSIAdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lasseignelab/cosiadata/issues
On BioConductor:CoSIAdata-1.13.0(data/experiment 3.24)CoSIAdata-1.12.0(data/experiment 3.23)
experimenthubrnaseqdataexperimentdatapackagetypedataorganismdatatissuecaenorhabditis_elegans_datadanio_rerio_datadrosophila_melanogaster_datahomo_sapiens_datamus_musculus_datarattus_norvegicus_datasequencingdataexpressiondatadatapkg
Last updated from:074412c771 (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 157 | ||
| linux-devel | NOTE | 263 | ||
| source / vignettes | OK | 209 | ||
| linux-release | NOTE | 331 |
Exports:Caenorhabditis_elegansDanio_rerioDrosophila_melanogasterHomo_sapiensMus_musculusRattus_norvegicus
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| .onLoad Function for Resource Name | .onLoad Caenorhabditis_elegans Danio_rerio Drosophila_melanogaster Homo_sapiens Mus_musculus Rattus_norvegicus |