Package: Cogito 1.18.0

Annika Bürger

Cogito: Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Authors:Annika Bürger [cre, aut]

Cogito_1.18.0.tar.gz
Cogito_1.18.0.zip(r-4.7)Cogito_1.18.0.zip(r-4.6)Cogito_1.18.0.zip(r-4.5)
Cogito_1.18.0.tgz(r-4.6-any)Cogito_1.18.0.tgz(r-4.5-any)
Cogito_1.18.0.tar.gz(r-4.7-any)Cogito_1.18.0.tar.gz(r-4.6-any)
Cogito_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Cogito/json (API)

# Install 'Cogito' in R:
install.packages('Cogito', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:Cogito-1.19.0(bioc 3.24)Cogito-1.18.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

functionalgenomicsgeneregulationsoftwaresequencing

4.30 score 3 scripts 304 downloads 5 mentions 2 exports 95 dependencies

Last updated from:3c485cfe82 (on RELEASE_3_23). Checks:1 WARNING, 4 OK, 5 ERROR. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING243
linux-devel-x86_64OK444
source / vignettesOK320
linux-release-x86_64OK460
macos-release-arm64ERROR292
macos-oldrel-arm64ERROR246
windows-develERROR373
windows-releaseERROR339
windows-oldrelERROR322
wasm-releaseOK202

Exports:aggregateRangessummarizeRanges

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocManagerBiocParallelBiostringsbitbit64bitopsblobbslibcachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArraydigestentropyevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegtablehighrhtmltoolshttrIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6rappdirsRColorBrewerRCurlrestfulrRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySummarizedExperimentsystinytexTxDb.Mmusculus.UCSC.mm9.knownGenevctrsviridisLitewithrxfunXMLXVectoryaml

Cogito: Compare annotated genomic intervals tool

Annika Buerger

Rendered fromCogito.Rmdusingknitr::rmarkdownon Jun 10 2026.

Last update: 2022-07-07
Started: 2021-08-12