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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CompensAID" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'CompensAID: Automated detection tool for spillover errors'
version: 1.0.0
doi: 10.32614/CRAN.package.CompensAID
abstract: The CompensAID is an automated quality control tool, which determines for
  each marker combination in the FCS file, whether there a potential presence of reference
  errors. Such reference errors, which represent themselves in the form of skewed
  populations, are detected by integrating the Secondary Stain Index (SSI) score.
  Marker combinations with an SSI < 1 are flagged by CompensAID.
authors:
- family-names: Olsman
  given-names: Rosan
  email: r.olsman@erasmusmc.nl
  orcid: https://orcid.org/0000-0001-5070-0476
- family-names: Bonte
  given-names: Sarah
  email: sarahm.bonte@ugent.be
  orcid: https://orcid.org/0000-0002-0637-4893
- family-names: Hofmans
  given-names: Mattias
  email: mattias.hofmans@uzgent.be
  orcid: https://orcid.org/0000-0003-2061-7617
- family-names: Buysse
  given-names: Malicorne
  email: malicorne.buysse@uzgent.be
- family-names: Borght
  given-names: Katrien
  name-particle: Van der
  email: katrien.vanderborght@irc.vib-ugent.be
  orcid: https://orcid.org/0000-0003-1635-4359
- family-names: Saeys
  given-names: Yvan
  email: yvan.saeys@ugent.be
  orcid: https://orcid.org/0000-0002-0415-1506
- family-names: Velden
  given-names: Vincent
  name-particle: van der
  email: v.h.j.vandervelden@erasmusmc.nl
  orcid: https://orcid.org/0000-0001-9457-3763
- family-names: Van Gassen
  given-names: Sofie
  email: sofie.vangassen@ugent.be
  orcid: https://orcid.org/0000-0002-7119-5330
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/Olsman/CompensAID
commit: 80ad4954699ed0d366cebda295f8e1c7a2a0f80c
url: https://github.com/Olsman/CompensAID
date-released: '2026-04-28'
contact:
- family-names: Olsman
  given-names: Rosan
  email: r.olsman@erasmusmc.nl
  orcid: https://orcid.org/0000-0001-5070-0476