Package: DCATS
Type: Package
Title: Differential Composition Analysis Transformed by a Similarity
        matrix
Version: 1.10.0
Authors@R: c(
    person("Xinyi", "Lin", , "linxy29@connect.hku.hk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7780-2461")),
    person("Chuen", "Chau", email = "hadley@posit.co", role = "aut"),
    person("Yuanhua", "Huang", email = "jenny@posit.co", role = "aut"),
    person("Joshua W.K. Ho", role = "aut"))
Description: Methods to detect the differential composition abundances
        between conditions in singel-cell RNA-seq experiments, with or
        without replicates. It aims to correct bias introduced by
        missclaisification and enable controlling of confounding
        covariates. To avoid the influence of proportion change from
        big cell types, DCATS can use either total cell number or
        specific reference group as normalization term.
Depends: R (>= 4.1.0), stats
License: MIT + file LICENSE
Imports: MCMCpack, matrixStats, robustbase, aod, e1071
Suggests: testthat (>= 3.0.0), knitr, Seurat, SeuratObject, tidyverse,
        rmarkdown, BiocStyle
VignetteBuilder: knitr
RoxygenNote: 7.2.3
biocViews: SingleCell, Normalization
Encoding: UTF-8
Config/testthat/edition: 3
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:00:56 UTC
RemoteUrl: https://github.com/bioc/DCATS
RemoteRef: RELEASE_3_23
RemoteSha: 80b8b0addfe4a84eb4bc14bbcdb7850fcad2e9c7
NeedsCompilation: no
Packaged: 2026-07-02 09:27:11 UTC; root
Author: Xinyi Lin [aut, cre] (ORCID: <https://orcid.org/0000-0002-7780-2461>),
  Chuen Chau [aut],
  Yuanhua Huang [aut],
  Joshua W.K. Ho [aut]
Maintainer: Xinyi Lin <linxy29@connect.hku.hk>