Package: DEGseq 1.66.0
Likun Wang
DEGseq: Identify Differentially Expressed Genes from RNA-seq data
DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.
Authors:
DEGseq_1.66.0.tar.gz
DEGseq_1.66.0.zip(r-4.7)DEGseq_1.66.0.zip(r-4.6)DEGseq_1.66.0.zip(r-4.5)
DEGseq_1.66.0.tgz(r-4.6-x86_64)DEGseq_1.66.0.tgz(r-4.6-arm64)DEGseq_1.66.0.tgz(r-4.5-x86_64)DEGseq_1.66.0.tgz(r-4.5-arm64)
DEGseq_1.66.0.tar.gz(r-4.7-arm64)DEGseq_1.66.0.tar.gz(r-4.7-x86_64)DEGseq_1.66.0.tar.gz(r-4.6-arm64)DEGseq_1.66.0.tar.gz(r-4.6-x86_64)
DEGseq_1.66.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DEGseq/json (API)
NEWS
| # Install 'DEGseq' in R: |
| install.packages('DEGseq', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:DEGseq-1.67.0(bioc 3.24)DEGseq-1.66.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
rnaseqpreprocessinggeneexpressiondifferentialexpressionimmunooncologycpp
Last updated from:c6b49c5872 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK, 4 WARNING. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 173 | ||
| linux-devel-arm64 | NOTE | 151 | ||
| linux-devel-x86_64 | NOTE | 155 | ||
| source / vignettes | OK | 174 | ||
| linux-release-arm64 | NOTE | 136 | ||
| linux-release-x86_64 | NOTE | 183 | ||
| macos-release-arm64 | WARNING | 83 | ||
| macos-release-x86_64 | WARNING | 211 | ||
| macos-oldrel-arm64 | WARNING | 114 | ||
| macos-oldrel-x86_64 | WARNING | 193 | ||
| windows-devel | NOTE | 120 | ||
| windows-release | NOTE | 118 | ||
| windows-oldrel | NOTE | 189 | ||
| wasm-release | OK | 120 |
Exports:DEGexpDEGexp2DEGseqgetGeneExpreadGeneExp
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrqvalueR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| DEGexp: Identifying Differentially Expressed Genes from gene expression data | DEGexp |
| DEGexp2: Identifying Differentially Expressed Genes from gene expression data | DEGexp2 |
| DEGseq: Identify Differentially Expressed Genes from RNA-seq data | DEGseq |
| GeneExpExample1000 | GeneExpExample1000 |
| GeneExpExample5000 | GeneExpExample5000 |
| getGeneExp: Count the number of reads and calculate the RPKM for each gene | getGeneExp |
| kidneyChr21.bed | kidneyChr21.bed |
| kidneyChr21Bowtie | kidneyChr21Bowtie |
| liverChr21.bed | liverChr21.bed |
| liverChr21Bowtie | liverChr21Bowtie |
| readGeneExp: read gene expression values to a matrix | readGeneExp |
| refFlatChr21 | refFlatChr21 |
