Package: DEScan2 1.32.0

Dario Righelli

DEScan2: Differential Enrichment Scan 2

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Authors:Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]

DEScan2_1.32.0.tar.gz
DEScan2_1.32.0.zip(r-4.7)DEScan2_1.32.0.zip(r-4.6)DEScan2_1.30.0.zip(r-4.5)
DEScan2_1.32.0.tgz(r-4.6-x86_64)DEScan2_1.32.0.tgz(r-4.6-arm64)DEScan2_1.30.0.tgz(r-4.5-x86_64)DEScan2_1.30.0.tgz(r-4.5-arm64)
DEScan2_1.32.0.tar.gz(r-4.7-arm64)DEScan2_1.32.0.tar.gz(r-4.7-x86_64)DEScan2_1.32.0.tar.gz(r-4.6-arm64)DEScan2_1.32.0.tar.gz(r-4.6-x86_64)
DEScan2_1.32.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DEScan2/json (API)
NEWS

# Install 'DEScan2' in R:
install.packages('DEScan2', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:DEScan2-1.33.0(bioc 3.24)DEScan2-1.32.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologypeakdetectionepigeneticssoftwaresequencingcoveragecpp

3.60 score 3 scripts 401 downloads 1 mentions 18 exports 119 dependencies

Last updated from:c39d54b467 (on RELEASE_3_23). Checks:1 ERROR, 8 NOTE, 2 OK, 3 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR259
linux-devel-arm64NOTE472
linux-devel-x86_64NOTE662
source / vignettesOK356
linux-release-arm64NOTE445
linux-release-x86_64NOTE554
macos-release-arm64NOTE312
macos-release-x86_64NOTE734
macos-oldrel-arm64FAIL107
macos-oldrel-x86_64FAIL214
windows-develNOTE571
windows-releaseNOTE579
windows-oldrelFAIL90
wasm-releaseOK207

Exports:binnedCoverageconstructBedRangescountFinalRegionscreateGrangescutGRangesPerChromosomedivideEachSampleByChromosomesfinalRegionsfindOverlapsOverSamplesfindPeaksfromSamplesToChrsGRangesListkeepRelevantChrsreadBamAsBedreadBedFilereadFilesAsGRangesListRleListToRleMatrixsaveGRangesAsBedsaveGRangesAsTsvsetGRGenomeInfo

Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobBSgenomecachemChIPpeakAnnocigarilloclicodetoolscpp11crayoncurldata.tableDBIdbplyrDelayedArraydplyrensembldbfarverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegraphgtablehmshttrhttr2InteractionSetIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimemulttestopensslpillarpkgconfigplyrpngprettyunitsprogressProtGenericspurrrpwalignR6rappdirsRBGLRColorBrewerRcppRcppArmadilloRcppThreadRCurlregioneRrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselectUCSC.utilsuniversalmotifutf8vctrsVennDiagramviridisLitewithrXMLxml2XVectoryaml

DEScan2

Dario Righelli - John Koberstein - Bruce Gomes

Rendered fromDEScan2.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2019-02-26
Started: 2017-12-19