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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DNAfusion" in publications use:'
type: software
license: GPL-3.0-only
title: 'DNAfusion: Identification of gene fusions using paired-end sequencing'
version: 1.14.0
doi: 10.1186/s12859-023-05259-3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DNAfusion
abstract: DNAfusion can identify gene fusions such as EML4-ALK based on paired-end
  sequencing results. This package was developed using position deduplicated BAM files
  generated with the AVENIO Oncology Analysis Software. These files are made using
  the AVENIO ctDNA surveillance kit and Illumina Nextseq 500 sequencing. This is a
  targeted hybridization NGS approach and includes ALK-specific but not EML4-specific
  probes.
authors:
- family-names: Maansson
  given-names: Christoffer Trier
  email: ctm@clin.au.dk
  orcid: https://orcid.org/0000-0002-3071-3437
preferred-citation:
  type: article
  title: 'DNAfusion: an R/Bioconductor package for increased sensitivity of detecting
    gene fusions in liquid biopsies'
  authors:
  - family-names: Maansson
    given-names: Christoffer Trier
    email: ctm@clin.au.dk
    orcid: https://orcid.org/0000-0002-3071-3437
  - family-names: Andersen
    given-names: Emma Roger
  - family-names: Ulhoi
    given-names: Maiken Parm
  - family-names: Meldgaard
    given-names: Peter
  - family-names: Sorensen
    given-names: Boe Sandahl
  year: '2023'
  journal: BMC Bioinformatics
  doi: 10.1186/s12859-023-05259-3
  volume: '24'
  issue: '131'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/CTrierMaansson/DNAfusion
commit: 6e7ecfb419da0451073212742fb5554c9874a33d
url: https://github.com/CTrierMaansson/DNAfusion
date-released: '2026-04-28'
contact:
- family-names: Maansson
  given-names: Christoffer Trier
  email: ctm@clin.au.dk
  orcid: https://orcid.org/0000-0002-3071-3437