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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "DegCre" in publications use:'
type: software
license: MIT
title: 'DegCre: Probabilistic association of DEGs to CREs from differential data'
version: 1.8.0
doi: 10.1101/gr.278598.123
identifiers:
- type: doi
  value: 10.32614/CRAN.package.DegCre
abstract: DegCre generates associations between differentially expressed genes (DEGs)
  and cis-regulatory elements (CREs) based on non-parametric concordance between differential
  data. The user provides GRanges of DEG TSS and CRE regions with differential p-value
  and optionally log-fold changes and DegCre returns an annotated Hits object with
  associations and their calculated probabilities. Additionally, the package provides
  functionality for visualization and conversion to other formats.
authors:
- family-names: Roberts
  given-names: Brian S.
  email: brianroberts1976@yahoo.com
  orcid: https://orcid.org/0009-0001-2914-6826
preferred-citation:
  type: generic
  title: Probabilistic association of differentially expressed genes with cis-regulatory
    elements
  authors:
  - family-names: Roberts
    given-names: Brian S.
    email: brianroberts1976@yahoo.com
    orcid: https://orcid.org/0009-0001-2914-6826
  - family-names: Anderson
    given-names: Ashlyn G.
  - family-names: Partridge
    given-names: Chris
  - family-names: Cooper
    given-names: Gregory M.
  - family-names: Myers
    given-names: Richard M.
  journal: Genome Research
  year: '2024'
  url: https://genome.cshlp.org/content/early/2024/04/16/gr.278598.123
  doi: 10.1101/gr.278598.123
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/brianSroberts/DegCre
commit: 849d519bfc987ef1b1dfc2d092aa7259c3b307c6
url: https://github.com/brianSroberts/DegCre
date-released: '2025-07-22'
contact:
- family-names: Roberts
  given-names: Brian S.
  email: brianroberts1976@yahoo.com
  orcid: https://orcid.org/0009-0001-2914-6826