Introduction | Getting started | List All Available Datasets | Load All Datasets | List medatada information | Search for Specific Datasets | Load a Dataset | Exploring a Dataset | Summarize a Dataset | Compare Metadata Across Multiple Datasets | Troubleshooting and Tips | How to cite data included in DoReMiTra | Session Info | References
Package: DoReMiTra 1.2.0
Ahmed Salah
DoReMiTra: Orchestrating Blood Radiation Transcriptomic Data
DoReMiTra is an R data package providing access to curated transcriptomic datasets related to blood radiation, with a focus on neutron, x-ray, and gamma ray studies. It is designed to facilitate radiation biology research and support data exploration and reproducibility in radiation transcriptomics. All datasets are provided as SummarizedExperiment objects, allowing seamless integration with the Bioconductor ecosystem.
Authors:
DoReMiTra_1.2.0.tar.gz
DoReMiTra_1.2.0.tar.gz(r-4.7-any)DoReMiTra_1.2.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DoReMiTra/json (API)
| # Install 'DoReMiTra' in R: |
| install.packages('DoReMiTra', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ahmedsahassan/doremitra/issues
On BioConductor:DoReMiTra-1.3.0(data/experiment 3.24)DoReMiTra-1.2.0(data/experiment 3.23)
experimentdatarnaseqdataexperimenthubexpressiondatageopackagetypedatabioconductordata-explorationintegrationradiationsummarizedsummarizedexperimenttranscriptomicsdatapkg
Last updated from:ab6e4364ed (on RELEASE_3_23). Checks:1 NOTE, 2 OK, 1 ERROR. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 178 | ||
| linux-devel | OK | 2472 | ||
| source / vignettes | OK | 347 | ||
| linux-release | ERROR | 618 |
Exports:compare_DoReMiTra_datasetsget_all_DoReMiTra_datasetsget_DoReMiTra_datalist_DoReMiTra_datasetslist_DoReMiTra_metadata_fieldssearch_DoReMiTra_datasetssummarize_DoReMiTra_se
Dependencies:abindAnnotationDbiAnnotationHubaskpassassortheadbeachmatbeeswarmBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocNeighborsBiocParallelBiocSingularBiocVersionBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrdqrngExperimentHubfarverfastmapfilelockFNNformatRfutile.loggerfutile.optionsgenericsGenomicRangesggbeeswarmggplot2ggrepelgluegridExtragtablehttrhttr2IRangesirlbaisobandjsonliteKEGGRESTlabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpheatmappillarpkgconfigpngpurrrR6rappdirsRColorBrewerRcppRcppAnnoyRcppEigenRcppMLRcppProgressrlangRSpectraRSQLitersvdRtsneS4ArraysS4VectorsS7ScaledMatrixscalesscaterscuttleSeqinfoSingleCellExperimentsitmosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8uwotvctrsviporviridisviridisLitewithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compare two or more dataset from the DoReMiTra collection | compare_DoReMiTra_datasets |
| Fetch all datasets from the DoReMiTra collection | get_all_DoReMiTra_datasets |
| Fetch a selected dataset from the DoReMiTra collection | get_DoReMiTra_data |
| List all available DoReMiTra datasets with associated key metadata information | list_DoReMiTra_datasets |
| List available metadata fields and their values in DoReMiTra | list_DoReMiTra_metadata_fields |
| Search DoReMiTra datasets by metadata filters | search_DoReMiTra_datasets |
| Summarize the metadata of a SummarizedExperiment object from the DoReMiTra collection | summarize_DoReMiTra_se |
