Package: DonaPLLP2013 1.50.0

Joseph D. Barry

DonaPLLP2013: Supplementary data package for Dona et al. (2013) containing example images and tables

An experiment data package associated with the publication Dona et al. (2013). Package contains runnable vignettes showing an example image segmentation for one posterior lateral line primordium, and also the data table and code used to analyze tissue-scale lifetime-ratio statistics.

Authors:Erika Dona, Joseph D. Barry, Guillaume Valentin, Charlotte Quirin, Anton Khmelinskii, Andreas Kunze, Sevi Durdu, Lionel R. Newton, Ana Fernandez-Minan, Wolfgang Huber, Michael Knop, Darren Gilmour

DonaPLLP2013_1.50.0.tar.gz
DonaPLLP2013_1.50.0.tar.gz(r-4.7-any)DonaPLLP2013_1.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DonaPLLP2013/json (API)

# Install 'DonaPLLP2013' in R:
install.packages('DonaPLLP2013', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:DonaPLLP2013-1.51.0(data/experiment 3.24)DonaPLLP2013-1.50.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdatatissuedatapkg

3.60 score 1 scripts 0 exports 38 dependencies

Last updated from:cfad4ecb28 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR114
linux-develOK174
source / vignettesOK435
linux-releaseOK180

Exports:

Dependencies:abindbase64encBiocGenericsbitopsbslibcachemclidigestEBImageevaluatefastmapfftwtoolsfontawesomefsgenericshighrhtmltoolshtmlwidgetsjpegjquerylibjsonliteknitrlatticelifecyclelocfitmemoisemimepngR6rappdirsRCurlrlangrmarkdownsasstifftinytexxfunyaml

PLLP image analysis
Introduction | Loading required packages | Loading image data | Defining parameters and setting units | Background subtraction | Smoothing | Adaptive thresholding | Sample alignment along axis of migration | Excluding signal outside of primordium | Cropping images for computational efficiency | Running median | Correcting for day-to-day variability | Tissue-scale ratio measurement | Theoretical explanation for ratio correction | The effect of mask thickness on the ratio
Rendered fromPLLPanalysis.Rnwusingutils::Sweave

Last update: 2018-08-31
Started: 2013-07-29

PLLP tissue-scale ratio statistics
Introduction | Load and inspect data | Statistical tests | Normality | Alternative tests
Rendered fromPLLPstatistics.Rnwusingutils::Sweave

Last update: 2013-09-06
Started: 2013-07-29