Package: EBSEA 1.40.0

Arfa Mehmood

EBSEA: Exon Based Strategy for Expression Analysis of genes

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

Authors:Arfa Mehmood, Asta Laiho, Laura L. Elo

EBSEA_1.40.0.tar.gz
EBSEA_1.40.0.zip(r-4.7)EBSEA_1.40.0.zip(r-4.6)EBSEA_1.40.0.zip(r-4.5)
EBSEA_1.40.0.tgz(r-4.6-any)EBSEA_1.40.0.tgz(r-4.5-any)
EBSEA_1.40.0.tar.gz(r-4.7-any)EBSEA_1.40.0.tar.gz(r-4.6-any)
EBSEA_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EBSEA/json (API)

# Install 'EBSEA' in R:
install.packages('EBSEA', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:EBSEA-1.41.0(bioc 3.24)EBSEA-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaredifferentialexpressiongeneexpressionsequencing

3.30 score 5 scripts 339 downloads 3 exports 47 dependencies

Last updated from:767a69c44b (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR169
linux-devel-x86_64OK281
source / vignettesOK237
linux-release-x86_64OK286
macos-release-arm64OK175
macos-oldrel-arm64OK138
windows-develOK194
windows-releaseOK192
windows-oldrelOK219
wasm-releaseOK190

Exports:EBSEAfilterCountsvisualizeGenes

Dependencies:abindBHBiobaseBiocGenericsBiocParallelclicodetoolscpp11DelayedArrayDESeq2EmpiricalBrownsMethodfarverformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglambda.rlatticelifecyclelocfitMatrixMatrixGenericsmatrixStatsR6RColorBrewerRcppRcppArmadillorlangS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentvctrsviridisLitewithrXVector

EBSEA: Exon Based Strategy for Expression Analysis of genes

Arfa Mehmood

Rendered fromEBSEA.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2020-10-18
Started: 2020-10-18