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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ELViS" in publications use:'
type: software
license: MIT
title: 'ELViS: An R Package for Estimating Copy Number Levels of Viral Genome Segments
  Using Base-Resolution Read Depth Profile'
version: 1.4.0
doi: 10.32614/CRAN.package.ELViS
abstract: Base-resolution copy number analysis of viral genome. Utilizes base-resolution
  read depth data over viral genome to find copy number segments with two-dimensional
  segmentation approach. Provides publish-ready figures, including histograms of read
  depths, coverage line plots over viral genome annotated with copy number change
  events and viral genes, and heatmaps showing multiple types of data with integrative
  clustering of samples.
authors:
- family-names: Choi
  given-names: Hyo Young
  email: hyoyoung.choi@uthsc.edu
  orcid: https://orcid.org/0000-0002-7627-8493
- family-names: Lee
  given-names: Jin-Young
  email: jlee307@uthsc.edu
  orcid: https://orcid.org/0000-0002-5366-7488
- family-names: Hoadley
  given-names: Katherine A.
  email: hoadley@med.unc.edu
  orcid: https://orcid.org/0000-0002-1216-477X
- family-names: Hayes
  given-names: D. Neil
  email: Neil.Hayes@uthsc.edu
  orcid: https://orcid.org/0000-0001-6203-7771
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/hyochoi/ELViS
commit: 185e850e5e57429313638c055aec3b53efcc050b
url: https://github.com/hyochoi/ELViS
date-released: '2026-04-28'
contact:
- family-names: Lee
  given-names: Jin-Young
  email: jlee307@uthsc.edu
  orcid: https://orcid.org/0000-0002-5366-7488